miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7193 3' -54.7 NC_001900.1 + 30928 0.67 0.660461
Target:  5'- cUGCgCcGACgAGUCUGCCAGG-ACGc -3'
miRNA:   3'- cACGaGaCUGgUUAGGCGGUCCaUGC- -5'
7193 3' -54.7 NC_001900.1 + 36559 0.67 0.64928
Target:  5'- gGUGgUCUGACCGAUgUagGUCGGGaACGg -3'
miRNA:   3'- -CACgAGACUGGUUAgG--CGGUCCaUGC- -5'
7193 3' -54.7 NC_001900.1 + 42387 0.67 0.64928
Target:  5'- -cGCUCgagcGACC-AUCCGCuCAGG-AUGg -3'
miRNA:   3'- caCGAGa---CUGGuUAGGCG-GUCCaUGC- -5'
7193 3' -54.7 NC_001900.1 + 13662 0.67 0.638084
Target:  5'- -gGCUCcGAUCAAguacCCGCCGGGguuucuccugGCGg -3'
miRNA:   3'- caCGAGaCUGGUUa---GGCGGUCCa---------UGC- -5'
7193 3' -54.7 NC_001900.1 + 3547 0.67 0.626881
Target:  5'- -cGCUCggGGCCGGUaaCgGCCuGGUGCa -3'
miRNA:   3'- caCGAGa-CUGGUUA--GgCGGuCCAUGc -5'
7193 3' -54.7 NC_001900.1 + 13000 0.67 0.626881
Target:  5'- -cGCUCUGACCAAcgUgGUCAGcGgcgGCGg -3'
miRNA:   3'- caCGAGACUGGUUa-GgCGGUC-Ca--UGC- -5'
7193 3' -54.7 NC_001900.1 + 8632 0.68 0.604501
Target:  5'- -gGCUCUGGUCGG-CUGCCGGGUcuccgACGg -3'
miRNA:   3'- caCGAGACUGGUUaGGCGGUCCA-----UGC- -5'
7193 3' -54.7 NC_001900.1 + 36859 0.68 0.560108
Target:  5'- -cGCUCUG-CCAGUUgGCCguugcacccuugAGGUACu -3'
miRNA:   3'- caCGAGACuGGUUAGgCGG------------UCCAUGc -5'
7193 3' -54.7 NC_001900.1 + 23670 0.69 0.506009
Target:  5'- -gGCUCUGACCAcUUCGUCGGcucgGCGu -3'
miRNA:   3'- caCGAGACUGGUuAGGCGGUCca--UGC- -5'
7193 3' -54.7 NC_001900.1 + 27110 1.08 0.001074
Target:  5'- aGUGCUCUGACCAAUCCGCCAGGUACGc -3'
miRNA:   3'- -CACGAGACUGGUUAGGCGGUCCAUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.