miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 3' -51 NC_001900.1 + 34559 0.66 0.912031
Target:  5'- aGACGGUGccGCCG-AUGG-CgGCUCGGg -3'
miRNA:   3'- cUUGUCGC--UGGCuUACUaGaCGAGCC- -5'
7194 3' -51 NC_001900.1 + 13354 0.66 0.912031
Target:  5'- cGAACAGguCGAgCGcAUGAUCcgGCgUCGGa -3'
miRNA:   3'- -CUUGUC--GCUgGCuUACUAGa-CG-AGCC- -5'
7194 3' -51 NC_001900.1 + 42824 0.66 0.912031
Target:  5'- -cAUGGuCGACCGAAUGAUCcgggagUGCgugUGGc -3'
miRNA:   3'- cuUGUC-GCUGGCUUACUAG------ACGa--GCC- -5'
7194 3' -51 NC_001900.1 + 29206 0.66 0.912031
Target:  5'- gGAGCc-CGACuCGGAgcUGAUCUGCUCc- -3'
miRNA:   3'- -CUUGucGCUG-GCUU--ACUAGACGAGcc -5'
7194 3' -51 NC_001900.1 + 44801 0.67 0.850097
Target:  5'- -cGCAGCGGaaGcuUGAUCUGCgucaCGGc -3'
miRNA:   3'- cuUGUCGCUggCuuACUAGACGa---GCC- -5'
7194 3' -51 NC_001900.1 + 36122 0.68 0.793245
Target:  5'- cAGCGGUGAUCGcGAUGAUguugacgUGCUCGGu -3'
miRNA:   3'- cUUGUCGCUGGC-UUACUAg------ACGAGCC- -5'
7194 3' -51 NC_001900.1 + 41850 0.69 0.740836
Target:  5'- --uCAGUGAUCGAAgucguUGAUCUGCaUGGu -3'
miRNA:   3'- cuuGUCGCUGGCUU-----ACUAGACGaGCC- -5'
7194 3' -51 NC_001900.1 + 47711 0.7 0.729951
Target:  5'- cGGGCGGCGACCGccagcgcguUGAacgccgcacgcuUCUGCgCGGg -3'
miRNA:   3'- -CUUGUCGCUGGCuu-------ACU------------AGACGaGCC- -5'
7194 3' -51 NC_001900.1 + 38075 0.74 0.484577
Target:  5'- uGACAGCG-CCG-AUGAUCUG-UCGGc -3'
miRNA:   3'- cUUGUCGCuGGCuUACUAGACgAGCC- -5'
7194 3' -51 NC_001900.1 + 42077 0.74 0.453388
Target:  5'- gGGGCAGCGACCGggUGgAUCcaCUCGu -3'
miRNA:   3'- -CUUGUCGCUGGCuuAC-UAGacGAGCc -5'
7194 3' -51 NC_001900.1 + 26426 1.1 0.002033
Target:  5'- uGAACAGCGACCGAAUGAUCUGCUCGGu -3'
miRNA:   3'- -CUUGUCGCUGGCUUACUAGACGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.