miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 47455 0.68 0.548244
Target:  5'- gUCGCcaccgGCCgagaaGCCGACCUCGaACAgcgaggAGAUCc -3'
miRNA:   3'- -AGCG-----CGG-----UGGCUGGAGC-UGUa-----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25525 0.68 0.548244
Target:  5'- cCG-GUCgACCGAUCUUGGCGUAGcCCu -3'
miRNA:   3'- aGCgCGG-UGGCUGGAGCUGUAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 46043 0.68 0.548244
Target:  5'- gCGCGgCGCauggcaaccaUGAUCUCGACGUucaugAGGCCg -3'
miRNA:   3'- aGCGCgGUG----------GCUGGAGCUGUA-----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 1603 0.68 0.548244
Target:  5'- uUCGCGuCCGCUGA-CUUGACAgccACCg -3'
miRNA:   3'- -AGCGC-GGUGGCUgGAGCUGUaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 24037 0.69 0.516533
Target:  5'- cCGCGCCaaccucgguGCCGAggcggcuauCC-CGGCAgGGACCg -3'
miRNA:   3'- aGCGCGG---------UGGCU---------GGaGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25252 0.69 0.506124
Target:  5'- -aGCGCCgauaGCCGACCggagccCGuCGUcGGACCa -3'
miRNA:   3'- agCGCGG----UGGCUGGa-----GCuGUA-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 45682 0.69 0.504053
Target:  5'- aCG-GCCgGCCGGCCUCaccacaccuuucGCGUGGGCCa -3'
miRNA:   3'- aGCgCGG-UGGCUGGAGc-----------UGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 48319 0.69 0.495806
Target:  5'- aCGCGCCGCaccagCGGCUgcgguaGACGUuccAGACCg -3'
miRNA:   3'- aGCGCGGUG-----GCUGGag----CUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16974 0.69 0.495806
Target:  5'- -gGCGCUggaGCCGguguggucGCaCUCGGCAUGGACg -3'
miRNA:   3'- agCGCGG---UGGC--------UG-GAGCUGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 39813 0.69 0.485585
Target:  5'- cCGUGCUcagGCCGGCCUCGuACGgaacGAUCu -3'
miRNA:   3'- aGCGCGG---UGGCUGGAGC-UGUau--CUGG- -5'
7196 3' -55.6 NC_001900.1 + 17051 0.7 0.474458
Target:  5'- -aGCGgccaagaCCGCCGucuCCUCGACGUuccAGACUg -3'
miRNA:   3'- agCGC-------GGUGGCu--GGAGCUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 2919 0.7 0.46545
Target:  5'- uUCGCGCaa-CGGCCUgGuCAUcGACCa -3'
miRNA:   3'- -AGCGCGgugGCUGGAgCuGUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40127 0.7 0.46545
Target:  5'- gUCGUGCCA--GACCUCGccuuCGaGGACCg -3'
miRNA:   3'- -AGCGCGGUggCUGGAGCu---GUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 18983 0.7 0.455547
Target:  5'- aCGCGCUgucggucguggGCCGAgCUUGACAUccACCa -3'
miRNA:   3'- aGCGCGG-----------UGGCUgGAGCUGUAucUGG- -5'
7196 3' -55.6 NC_001900.1 + 2465 0.7 0.436088
Target:  5'- cUGCGUC-CgGGCUgccacCGACGUAGACCa -3'
miRNA:   3'- aGCGCGGuGgCUGGa----GCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 41084 0.7 0.436088
Target:  5'- gCGgGCCagGCCgguGACCUCGcggcCGUGGACCu -3'
miRNA:   3'- aGCgCGG--UGG---CUGGAGCu---GUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 26478 0.7 0.436088
Target:  5'- aC-CGCCGCCGAUCUCGA-AUGcGCCg -3'
miRNA:   3'- aGcGCGGUGGCUGGAGCUgUAUcUGG- -5'
7196 3' -55.6 NC_001900.1 + 16455 0.71 0.42654
Target:  5'- aCGuCGaCUACCucaaccacauCCUCGACGUGGGCCa -3'
miRNA:   3'- aGC-GC-GGUGGcu--------GGAGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 7138 0.71 0.417117
Target:  5'- -gGuCGCCAUCGGCCggaUCGugAUgaAGGCCa -3'
miRNA:   3'- agC-GCGGUGGCUGG---AGCugUA--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3233 0.71 0.407823
Target:  5'- cCGCaUgGCCGACCUCGGCAacccguucGACCu -3'
miRNA:   3'- aGCGcGgUGGCUGGAGCUGUau------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.