miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 33935 0.66 0.667864
Target:  5'- gCGUGCCucggcuggugugGCCGACgCUCGACca--GCCg -3'
miRNA:   3'- aGCGCGG------------UGGCUG-GAGCUGuaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 32410 0.67 0.644938
Target:  5'- ---aGCCGCuugaaguCGGCCUUGGCcUGGGCCg -3'
miRNA:   3'- agcgCGGUG-------GCUGGAGCUGuAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 2641 0.67 0.635092
Target:  5'- -gGCGCagaggUACCGagGCCagagCGACGUGGACUg -3'
miRNA:   3'- agCGCG-----GUGGC--UGGa---GCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3530 0.67 0.635092
Target:  5'- -gGaCGCCAUCGACg-CGGCGcucgGGGCCg -3'
miRNA:   3'- agC-GCGGUGGCUGgaGCUGUa---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 17639 0.67 0.631809
Target:  5'- aUCGCGCUGCCGcgugaugaggcgcuACCgaUCGAUGUgcAGGCUg -3'
miRNA:   3'- -AGCGCGGUGGC--------------UGG--AGCUGUA--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 21944 0.67 0.602294
Target:  5'- aUCGCGaugaGCCGugaGgCUgGGCGUGGGCCa -3'
miRNA:   3'- -AGCGCgg--UGGC---UgGAgCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40991 0.67 0.602294
Target:  5'- aUCGCGUgGCCuucguuGGCCUUGcCGUcAGGCCc -3'
miRNA:   3'- -AGCGCGgUGG------CUGGAGCuGUA-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 5725 0.67 0.602294
Target:  5'- gCGgGCuCACCaACCUCGAU---GACCg -3'
miRNA:   3'- aGCgCG-GUGGcUGGAGCUGuauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 36117 0.68 0.591399
Target:  5'- aCGCGUacUCaGCCUCGACAcGGACUg -3'
miRNA:   3'- aGCGCGguGGcUGGAGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 30138 0.68 0.591399
Target:  5'- gUGCGCCAcuucCCGAgcuUCUUGGCcuccUGGACCa -3'
miRNA:   3'- aGCGCGGU----GGCU---GGAGCUGu---AUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 6739 0.68 0.591399
Target:  5'- gUCGauuGCCAaCGACCUCGAUG-AGAUCc -3'
miRNA:   3'- -AGCg--CGGUgGCUGGAGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 13275 0.68 0.591399
Target:  5'- aCGCGaCCGCUGACgacguugUGACGUuguGGGCCa -3'
miRNA:   3'- aGCGC-GGUGGCUGga-----GCUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 47374 0.68 0.580539
Target:  5'- -gGCGUUGCCG-CCUuuggUGACGUGGACg -3'
miRNA:   3'- agCGCGGUGGCuGGA----GCUGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 36066 0.68 0.580539
Target:  5'- cUUGCuGCCaggGCCGuCCUUGACGauGACCu -3'
miRNA:   3'- -AGCG-CGG---UGGCuGGAGCUGUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 26798 0.68 0.580539
Target:  5'- cUC-CGUCACuccaCGACCUCGGCcaucgcUGGGCCg -3'
miRNA:   3'- -AGcGCGGUG----GCUGGAGCUGu-----AUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 46784 0.68 0.569721
Target:  5'- -aGCGCagGCCGAucCCUUGGCGUuGAUCa -3'
miRNA:   3'- agCGCGg-UGGCU--GGAGCUGUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 39201 0.68 0.558953
Target:  5'- uUCGaGCCGCCG-CgUCGGuCAUcGACCg -3'
miRNA:   3'- -AGCgCGGUGGCuGgAGCU-GUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 20017 0.68 0.558953
Target:  5'- gUCGCGCUGCUGGggUCUCGAaugaGUGG-CCu -3'
miRNA:   3'- -AGCGCGGUGGCU--GGAGCUg---UAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 15110 0.68 0.558953
Target:  5'- ---aGCCACCGGCUggUCGAgCGUcGGCCa -3'
miRNA:   3'- agcgCGGUGGCUGG--AGCU-GUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 29742 0.68 0.558953
Target:  5'- cUCG-GCCACCGugUUggccccacCGcCGUAGACCc -3'
miRNA:   3'- -AGCgCGGUGGCugGA--------GCuGUAUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.