miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 39813 0.69 0.485585
Target:  5'- cCGUGCUcagGCCGGCCUCGuACGgaacGAUCu -3'
miRNA:   3'- aGCGCGG---UGGCUGGAGC-UGUau--CUGG- -5'
7196 3' -55.6 NC_001900.1 + 46313 0.71 0.388732
Target:  5'- uUCGagGUCACCGACCUCGuCGUcccacgcGGACg -3'
miRNA:   3'- -AGCg-CGGUGGCUGGAGCuGUA-------UCUGg -5'
7196 3' -55.6 NC_001900.1 + 40763 0.66 0.721676
Target:  5'- -aGCGCCGCCGugaaccaccACCagGcCAUacggGGACCg -3'
miRNA:   3'- agCGCGGUGGC---------UGGagCuGUA----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 8515 0.66 0.678736
Target:  5'- cCGCuGCUucGCCGACCcggacaaguaccUCGACAagaUGGGCUu -3'
miRNA:   3'- aGCG-CGG--UGGCUGG------------AGCUGU---AUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 20017 0.68 0.558953
Target:  5'- gUCGCGCUGCUGGggUCUCGAaugaGUGG-CCu -3'
miRNA:   3'- -AGCGCGGUGGCU--GGAGCUg---UAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 42530 0.71 0.387838
Target:  5'- -gGCGCauacaaggaccaACUGACCUCGuCGUAGACg -3'
miRNA:   3'- agCGCGg-----------UGGCUGGAGCuGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 33793 0.66 0.667864
Target:  5'- cCGUGCgGCCacGGCCUCGACcaaGGugUc -3'
miRNA:   3'- aGCGCGgUGG--CUGGAGCUGua-UCugG- -5'
7196 3' -55.6 NC_001900.1 + 10771 0.72 0.35487
Target:  5'- gCGgaaGCUGCCGACCUgGGCcgGGACUu -3'
miRNA:   3'- aGCg--CGGUGGCUGGAgCUGuaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 42779 0.73 0.330272
Target:  5'- gUCGUGCCAggcguCCaGCC-CGACGUGGAUCu -3'
miRNA:   3'- -AGCGCGGU-----GGcUGGaGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 29742 0.68 0.558953
Target:  5'- cUCG-GCCACCGugUUggccccacCGcCGUAGACCc -3'
miRNA:   3'- -AGCgCGGUGGCugGA--------GCuGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 41502 0.66 0.715307
Target:  5'- uUCGCGCCuuCGAUCUgcuccacgaaguacgUGACGUuguccgacAGGCCc -3'
miRNA:   3'- -AGCGCGGugGCUGGA---------------GCUGUA--------UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 2465 0.7 0.436088
Target:  5'- cUGCGUC-CgGGCUgccacCGACGUAGACCa -3'
miRNA:   3'- aGCGCGGuGgCUGGa----GCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3233 0.71 0.407823
Target:  5'- cCGCaUgGCCGACCUCGGCAacccguucGACCu -3'
miRNA:   3'- aGCGcGgUGGCUGGAGCUGUau------CUGG- -5'
7196 3' -55.6 NC_001900.1 + 13275 0.68 0.591399
Target:  5'- aCGCGaCCGCUGACgacguugUGACGUuguGGGCCa -3'
miRNA:   3'- aGCGC-GGUGGCUGga-----GCUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40182 0.66 0.678736
Target:  5'- aCGCGCCG-CGAUUUCGACc---ACCa -3'
miRNA:   3'- aGCGCGGUgGCUGGAGCUGuaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 16910 0.66 0.721676
Target:  5'- cCGCGCCGCuuguCGGCUUgGugGcuGGCCu -3'
miRNA:   3'- aGCGCGGUG----GCUGGAgCugUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 21944 0.67 0.602294
Target:  5'- aUCGCGaugaGCCGugaGgCUgGGCGUGGGCCa -3'
miRNA:   3'- -AGCGCgg--UGGC---UgGAgCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 37847 0.71 0.398659
Target:  5'- gCGUGCCACU--CCUCGAUGUGGGgCu -3'
miRNA:   3'- aGCGCGGUGGcuGGAGCUGUAUCUgG- -5'
7196 3' -55.6 NC_001900.1 + 16455 0.71 0.42654
Target:  5'- aCGuCGaCUACCucaaccacauCCUCGACGUGGGCCa -3'
miRNA:   3'- aGC-GC-GGUGGcu--------GGAGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 15046 0.71 0.398659
Target:  5'- -aGCGCaCGgUGGCCcCGACAgGGACCa -3'
miRNA:   3'- agCGCG-GUgGCUGGaGCUGUaUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.