miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 42779 0.73 0.330272
Target:  5'- gUCGUGCCAggcguCCaGCC-CGACGUGGAUCu -3'
miRNA:   3'- -AGCGCGGU-----GGcUGGaGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 20017 0.68 0.558953
Target:  5'- gUCGCGCUGCUGGggUCUCGAaugaGUGG-CCu -3'
miRNA:   3'- -AGCGCGGUGGCU--GGAGCUg---UAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 46784 0.68 0.569721
Target:  5'- -aGCGCagGCCGAucCCUUGGCGUuGAUCa -3'
miRNA:   3'- agCGCGg-UGGCU--GGAGCUGUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16910 0.66 0.721676
Target:  5'- cCGCGCCGCuuguCGGCUUgGugGcuGGCCu -3'
miRNA:   3'- aGCGCGGUG----GCUGGAgCugUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3233 0.71 0.407823
Target:  5'- cCGCaUgGCCGACCUCGGCAacccguucGACCu -3'
miRNA:   3'- aGCGcGgUGGCUGGAGCUGUau------CUGG- -5'
7196 3' -55.6 NC_001900.1 + 7138 0.71 0.417117
Target:  5'- -gGuCGCCAUCGGCCggaUCGugAUgaAGGCCa -3'
miRNA:   3'- agC-GCGGUGGCUGG---AGCugUA--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 2465 0.7 0.436088
Target:  5'- cUGCGUC-CgGGCUgccacCGACGUAGACCa -3'
miRNA:   3'- aGCGCGGuGgCUGGa----GCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 18983 0.7 0.455547
Target:  5'- aCGCGCUgucggucguggGCCGAgCUUGACAUccACCa -3'
miRNA:   3'- aGCGCGG-----------UGGCUgGAGCUGUAucUGG- -5'
7196 3' -55.6 NC_001900.1 + 16974 0.69 0.495806
Target:  5'- -gGCGCUggaGCCGguguggucGCaCUCGGCAUGGACg -3'
miRNA:   3'- agCGCGG---UGGC--------UG-GAGCUGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 15110 0.68 0.558953
Target:  5'- ---aGCCACCGGCUggUCGAgCGUcGGCCa -3'
miRNA:   3'- agcgCGGUGGCUGG--AGCU-GUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 24037 0.69 0.516533
Target:  5'- cCGCGCCaaccucgguGCCGAggcggcuauCC-CGGCAgGGACCg -3'
miRNA:   3'- aGCGCGG---------UGGCU---------GGaGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 39813 0.69 0.485585
Target:  5'- cCGUGCUcagGCCGGCCUCGuACGgaacGAUCu -3'
miRNA:   3'- aGCGCGG---UGGCUGGAGC-UGUau--CUGG- -5'
7196 3' -55.6 NC_001900.1 + 10771 0.72 0.35487
Target:  5'- gCGgaaGCUGCCGACCUgGGCcgGGACUu -3'
miRNA:   3'- aGCg--CGGUGGCUGGAgCUGuaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25525 0.68 0.548244
Target:  5'- cCG-GUCgACCGAUCUUGGCGUAGcCCu -3'
miRNA:   3'- aGCgCGG-UGGCUGGAGCUGUAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 42530 0.71 0.387838
Target:  5'- -gGCGCauacaaggaccaACUGACCUCGuCGUAGACg -3'
miRNA:   3'- agCGCGg-----------UGGCUGGAGCuGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 17051 0.7 0.474458
Target:  5'- -aGCGgccaagaCCGCCGucuCCUCGACGUuccAGACUg -3'
miRNA:   3'- agCGC-------GGUGGCu--GGAGCUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 46043 0.68 0.548244
Target:  5'- gCGCGgCGCauggcaaccaUGAUCUCGACGUucaugAGGCCg -3'
miRNA:   3'- aGCGCgGUG----------GCUGGAGCUGUA-----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 29742 0.68 0.558953
Target:  5'- cUCG-GCCACCGugUUggccccacCGcCGUAGACCc -3'
miRNA:   3'- -AGCgCGGUGGCugGA--------GCuGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 46313 0.71 0.388732
Target:  5'- uUCGagGUCACCGACCUCGuCGUcccacgcGGACg -3'
miRNA:   3'- -AGCg-CGGUGGCUGGAGCuGUA-------UCUGg -5'
7196 3' -55.6 NC_001900.1 + 41084 0.7 0.436088
Target:  5'- gCGgGCCagGCCgguGACCUCGcggcCGUGGACCu -3'
miRNA:   3'- aGCgCGG--UGG---CUGGAGCu---GUAUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.