miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 1603 0.68 0.548244
Target:  5'- uUCGCGuCCGCUGA-CUUGACAgccACCg -3'
miRNA:   3'- -AGCGC-GGUGGCUgGAGCUGUaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 2465 0.7 0.436088
Target:  5'- cUGCGUC-CgGGCUgccacCGACGUAGACCa -3'
miRNA:   3'- aGCGCGGuGgCUGGa----GCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 2641 0.67 0.635092
Target:  5'- -gGCGCagaggUACCGagGCCagagCGACGUGGACUg -3'
miRNA:   3'- agCGCG-----GUGGC--UGGa---GCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 2919 0.7 0.46545
Target:  5'- uUCGCGCaa-CGGCCUgGuCAUcGACCa -3'
miRNA:   3'- -AGCGCGgugGCUGGAgCuGUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3157 0.66 0.721676
Target:  5'- cUCGCgGCCAUCGAagUCUUGAgucGGACCc -3'
miRNA:   3'- -AGCG-CGGUGGCU--GGAGCUguaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3233 0.71 0.407823
Target:  5'- cCGCaUgGCCGACCUCGGCAacccguucGACCu -3'
miRNA:   3'- aGCGcGgUGGCUGGAGCUGUau------CUGG- -5'
7196 3' -55.6 NC_001900.1 + 3530 0.67 0.635092
Target:  5'- -gGaCGCCAUCGACg-CGGCGcucgGGGCCg -3'
miRNA:   3'- agC-GCGGUGGCUGgaGCUGUa---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 4363 0.66 0.700337
Target:  5'- -aGCgGCCAgCGGCCUgGcugccGCAggGGACCg -3'
miRNA:   3'- agCG-CGGUgGCUGGAgC-----UGUa-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 5423 0.66 0.700337
Target:  5'- -gGaCGCCuacgacacccgaACCGACCUCGGCAac-ACCc -3'
miRNA:   3'- agC-GCGG------------UGGCUGGAGCUGUaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 5725 0.67 0.602294
Target:  5'- gCGgGCuCACCaACCUCGAU---GACCg -3'
miRNA:   3'- aGCgCG-GUGGcUGGAGCUGuauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 6099 0.66 0.678736
Target:  5'- uUCGCGUC-CC--CCUCGACGgAGGCg -3'
miRNA:   3'- -AGCGCGGuGGcuGGAGCUGUaUCUGg -5'
7196 3' -55.6 NC_001900.1 + 6739 0.68 0.591399
Target:  5'- gUCGauuGCCAaCGACCUCGAUG-AGAUCc -3'
miRNA:   3'- -AGCg--CGGUgGCUGGAGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 7138 0.71 0.417117
Target:  5'- -gGuCGCCAUCGGCCggaUCGugAUgaAGGCCa -3'
miRNA:   3'- agC-GCGGUGGCUGG---AGCugUA--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 8515 0.66 0.678736
Target:  5'- cCGCuGCUucGCCGACCcggacaaguaccUCGACAagaUGGGCUu -3'
miRNA:   3'- aGCG-CGG--UGGCUGG------------AGCUGU---AUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 10469 0.66 0.720616
Target:  5'- aUGCGCCGCUgggacgaggaagaGGCCgCGAU--GGGCCu -3'
miRNA:   3'- aGCGCGGUGG-------------CUGGaGCUGuaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 10771 0.72 0.35487
Target:  5'- gCGgaaGCUGCCGACCUgGGCcgGGACUu -3'
miRNA:   3'- aGCg--CGGUGGCUGGAgCUGuaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 12513 0.66 0.721676
Target:  5'- gCGgGCCACCcGCaaagcgaugaUCGGCugggAGACCa -3'
miRNA:   3'- aGCgCGGUGGcUGg---------AGCUGua--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 13275 0.68 0.591399
Target:  5'- aCGCGaCCGCUGACgacguugUGACGUuguGGGCCa -3'
miRNA:   3'- aGCGC-GGUGGCUGga-----GCUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 14281 0.66 0.721676
Target:  5'- -gGCGucacCCGCCGugCUCGAaccaaccuGGCCa -3'
miRNA:   3'- agCGC----GGUGGCugGAGCUguau----CUGG- -5'
7196 3' -55.6 NC_001900.1 + 15046 0.71 0.398659
Target:  5'- -aGCGCaCGgUGGCCcCGACAgGGACCa -3'
miRNA:   3'- agCGCG-GUgGCUGGaGCUGUaUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.