miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 15110 0.68 0.558953
Target:  5'- ---aGCCACCGGCUggUCGAgCGUcGGCCa -3'
miRNA:   3'- agcgCGGUGGCUGG--AGCU-GUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 15484 0.66 0.700337
Target:  5'- uUCGCuUCACCuACCUCGACcacaaAGACg -3'
miRNA:   3'- -AGCGcGGUGGcUGGAGCUGua---UCUGg -5'
7196 3' -55.6 NC_001900.1 + 16455 0.71 0.42654
Target:  5'- aCGuCGaCUACCucaaccacauCCUCGACGUGGGCCa -3'
miRNA:   3'- aGC-GC-GGUGGcu--------GGAGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16657 0.66 0.700337
Target:  5'- gUCGgGCU-CCGACgC-CGACA-AGGCCa -3'
miRNA:   3'- -AGCgCGGuGGCUG-GaGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16910 0.66 0.721676
Target:  5'- cCGCGCCGCuuguCGGCUUgGugGcuGGCCu -3'
miRNA:   3'- aGCGCGGUG----GCUGGAgCugUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16974 0.69 0.495806
Target:  5'- -gGCGCUggaGCCGguguggucGCaCUCGGCAUGGACg -3'
miRNA:   3'- agCGCGG---UGGC--------UG-GAGCUGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 17051 0.7 0.474458
Target:  5'- -aGCGgccaagaCCGCCGucuCCUCGACGUuccAGACUg -3'
miRNA:   3'- agCGC-------GGUGGCu--GGAGCUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 17639 0.67 0.631809
Target:  5'- aUCGCGCUGCCGcgugaugaggcgcuACCgaUCGAUGUgcAGGCUg -3'
miRNA:   3'- -AGCGCGGUGGC--------------UGG--AGCUGUA--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 18983 0.7 0.455547
Target:  5'- aCGCGCUgucggucguggGCCGAgCUUGACAUccACCa -3'
miRNA:   3'- aGCGCGG-----------UGGCUgGAGCUGUAucUGG- -5'
7196 3' -55.6 NC_001900.1 + 19830 0.66 0.678736
Target:  5'- cUCGuCGCCGucggaUGACCuUCGACGcGGACUu -3'
miRNA:   3'- -AGC-GCGGUg----GCUGG-AGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 20017 0.68 0.558953
Target:  5'- gUCGCGCUGCUGGggUCUCGAaugaGUGG-CCu -3'
miRNA:   3'- -AGCGCGGUGGCU--GGAGCUg---UAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 21944 0.67 0.602294
Target:  5'- aUCGCGaugaGCCGugaGgCUgGGCGUGGGCCa -3'
miRNA:   3'- -AGCGCgg--UGGC---UgGAgCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 23212 0.74 0.284915
Target:  5'- cCGCGUgGCCGucuacauCCU-GGCGUGGACCa -3'
miRNA:   3'- aGCGCGgUGGCu------GGAgCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 24037 0.69 0.516533
Target:  5'- cCGCGCCaaccucgguGCCGAggcggcuauCC-CGGCAgGGACCg -3'
miRNA:   3'- aGCGCGG---------UGGCU---------GGaGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25103 0.71 0.389628
Target:  5'- cCGaCGaCGCCGGuuUCGAgGUGGACCg -3'
miRNA:   3'- aGC-GCgGUGGCUggAGCUgUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25252 0.69 0.506124
Target:  5'- -aGCGCCgauaGCCGACCggagccCGuCGUcGGACCa -3'
miRNA:   3'- agCGCGG----UGGCUGGa-----GCuGUA-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25448 1.11 0.000649
Target:  5'- uUCGCGCCACCGACCUCGACAUAGACCc -3'
miRNA:   3'- -AGCGCGGUGGCUGGAGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 25525 0.68 0.548244
Target:  5'- cCG-GUCgACCGAUCUUGGCGUAGcCCu -3'
miRNA:   3'- aGCgCGG-UGGCUGGAGCUGUAUCuGG- -5'
7196 3' -55.6 NC_001900.1 + 26478 0.7 0.436088
Target:  5'- aC-CGCCGCCGAUCUCGA-AUGcGCCg -3'
miRNA:   3'- aGcGCGGUGGCUGGAGCUgUAUcUGG- -5'
7196 3' -55.6 NC_001900.1 + 26798 0.68 0.580539
Target:  5'- cUC-CGUCACuccaCGACCUCGGCcaucgcUGGGCCg -3'
miRNA:   3'- -AGcGCGGUG----GCUGGAGCUGu-----AUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.