miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 48319 0.69 0.495806
Target:  5'- aCGCGCCGCaccagCGGCUgcgguaGACGUuccAGACCg -3'
miRNA:   3'- aGCGCGGUG-----GCUGGag----CUGUA---UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 47455 0.68 0.548244
Target:  5'- gUCGCcaccgGCCgagaaGCCGACCUCGaACAgcgaggAGAUCc -3'
miRNA:   3'- -AGCG-----CGG-----UGGCUGGAGC-UGUa-----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 47374 0.68 0.580539
Target:  5'- -gGCGUUGCCG-CCUuuggUGACGUGGACg -3'
miRNA:   3'- agCGCGGUGGCuGGA----GCUGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 46802 0.75 0.250993
Target:  5'- gCuCGUCGCUGACCUCGACcu-GGCCg -3'
miRNA:   3'- aGcGCGGUGGCUGGAGCUGuauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 46784 0.68 0.569721
Target:  5'- -aGCGCagGCCGAucCCUUGGCGUuGAUCa -3'
miRNA:   3'- agCGCGg-UGGCU--GGAGCUGUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 46313 0.71 0.388732
Target:  5'- uUCGagGUCACCGACCUCGuCGUcccacgcGGACg -3'
miRNA:   3'- -AGCg-CGGUGGCUGGAGCuGUA-------UCUGg -5'
7196 3' -55.6 NC_001900.1 + 46043 0.68 0.548244
Target:  5'- gCGCGgCGCauggcaaccaUGAUCUCGACGUucaugAGGCCg -3'
miRNA:   3'- aGCGCgGUG----------GCUGGAGCUGUA-----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 45682 0.69 0.504053
Target:  5'- aCG-GCCgGCCGGCCUCaccacaccuuucGCGUGGGCCa -3'
miRNA:   3'- aGCgCGG-UGGCUGGAGc-----------UGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 44066 0.66 0.721676
Target:  5'- cCcCGCCGCCGugCUggagccCGACGagcauGACCg -3'
miRNA:   3'- aGcGCGGUGGCugGA------GCUGUau---CUGG- -5'
7196 3' -55.6 NC_001900.1 + 43071 0.73 0.327882
Target:  5'- cUCGCGCCGauu-CCUCGACGUAGcgggcgugccccauGCCg -3'
miRNA:   3'- -AGCGCGGUggcuGGAGCUGUAUC--------------UGG- -5'
7196 3' -55.6 NC_001900.1 + 42779 0.73 0.330272
Target:  5'- gUCGUGCCAggcguCCaGCC-CGACGUGGAUCu -3'
miRNA:   3'- -AGCGCGGU-----GGcUGGaGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 42717 0.76 0.18808
Target:  5'- cUUGCGCUGCUgguuGACCUUGACAgcGGCCg -3'
miRNA:   3'- -AGCGCGGUGG----CUGGAGCUGUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 42530 0.71 0.387838
Target:  5'- -gGCGCauacaaggaccaACUGACCUCGuCGUAGACg -3'
miRNA:   3'- agCGCGg-----------UGGCUGGAGCuGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 41502 0.66 0.715307
Target:  5'- uUCGCGCCuuCGAUCUgcuccacgaaguacgUGACGUuguccgacAGGCCc -3'
miRNA:   3'- -AGCGCGGugGCUGGA---------------GCUGUA--------UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 41111 0.71 0.380732
Target:  5'- aUGCgGCCACCGGCCgCGGaGUAGAUg -3'
miRNA:   3'- aGCG-CGGUGGCUGGaGCUgUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 41084 0.7 0.436088
Target:  5'- gCGgGCCagGCCgguGACCUCGcggcCGUGGACCu -3'
miRNA:   3'- aGCgCGG--UGG---CUGGAGCu---GUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40991 0.67 0.602294
Target:  5'- aUCGCGUgGCCuucguuGGCCUUGcCGUcAGGCCc -3'
miRNA:   3'- -AGCGCGgUGG------CUGGAGCuGUA-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40763 0.66 0.721676
Target:  5'- -aGCGCCGCCGugaaccaccACCagGcCAUacggGGACCg -3'
miRNA:   3'- agCGCGGUGGC---------UGGagCuGUA----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40182 0.66 0.678736
Target:  5'- aCGCGCCG-CGAUUUCGACc---ACCa -3'
miRNA:   3'- aGCGCGGUgGCUGGAGCUGuaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 40127 0.7 0.46545
Target:  5'- gUCGUGCCA--GACCUCGccuuCGaGGACCg -3'
miRNA:   3'- -AGCGCGGUggCUGGAGCu---GUaUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.