miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 25448 1.11 0.000649
Target:  5'- uUCGCGCCACCGACCUCGACAUAGACCc -3'
miRNA:   3'- -AGCGCGGUGGCUGGAGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 26979 0.84 0.054727
Target:  5'- gUCGUGCCGCUGGCCUCGGa--AGGCCg -3'
miRNA:   3'- -AGCGCGGUGGCUGGAGCUguaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 27803 0.77 0.16436
Target:  5'- aUCGCGCCACCGACCgcgccgagcaCGGCGagcuGGCUg -3'
miRNA:   3'- -AGCGCGGUGGCUGGa---------GCUGUau--CUGG- -5'
7196 3' -55.6 NC_001900.1 + 42717 0.76 0.18808
Target:  5'- cUUGCGCUGCUgguuGACCUUGACAgcGGCCg -3'
miRNA:   3'- -AGCGCGGUGG----CUGGAGCUGUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 33649 0.75 0.238385
Target:  5'- gUCGCGacggaCACCGGCCUUgugGGCGUGGugGCCa -3'
miRNA:   3'- -AGCGCg----GUGGCUGGAG---CUGUAUC--UGG- -5'
7196 3' -55.6 NC_001900.1 + 46802 0.75 0.250993
Target:  5'- gCuCGUCGCUGACCUCGACcu-GGCCg -3'
miRNA:   3'- aGcGCGGUGGCUGGAGCUGuauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 23212 0.74 0.284915
Target:  5'- cCGCGUgGCCGucuacauCCU-GGCGUGGACCa -3'
miRNA:   3'- aGCGCGgUGGCu------GGAgCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 43071 0.73 0.327882
Target:  5'- cUCGCGCCGauu-CCUCGACGUAGcgggcgugccccauGCCg -3'
miRNA:   3'- -AGCGCGGUggcuGGAGCUGUAUC--------------UGG- -5'
7196 3' -55.6 NC_001900.1 + 42779 0.73 0.330272
Target:  5'- gUCGUGCCAggcguCCaGCC-CGACGUGGAUCu -3'
miRNA:   3'- -AGCGCGGU-----GGcUGGaGCUGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 34843 0.72 0.33833
Target:  5'- aCGUGCCugGCCgcGACCUUGuucgcguucGCGUAGACCu -3'
miRNA:   3'- aGCGCGG--UGG--CUGGAGC---------UGUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 10771 0.72 0.35487
Target:  5'- gCGgaaGCUGCCGACCUgGGCcgGGACUu -3'
miRNA:   3'- aGCg--CGGUGGCUGGAgCUGuaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 41111 0.71 0.380732
Target:  5'- aUGCgGCCACCGGCCgCGGaGUAGAUg -3'
miRNA:   3'- aGCG-CGGUGGCUGGaGCUgUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 42530 0.71 0.387838
Target:  5'- -gGCGCauacaaggaccaACUGACCUCGuCGUAGACg -3'
miRNA:   3'- agCGCGg-----------UGGCUGGAGCuGUAUCUGg -5'
7196 3' -55.6 NC_001900.1 + 46313 0.71 0.388732
Target:  5'- uUCGagGUCACCGACCUCGuCGUcccacgcGGACg -3'
miRNA:   3'- -AGCg-CGGUGGCUGGAGCuGUA-------UCUGg -5'
7196 3' -55.6 NC_001900.1 + 25103 0.71 0.389628
Target:  5'- cCGaCGaCGCCGGuuUCGAgGUGGACCg -3'
miRNA:   3'- aGC-GCgGUGGCUggAGCUgUAUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 15046 0.71 0.398659
Target:  5'- -aGCGCaCGgUGGCCcCGACAgGGACCa -3'
miRNA:   3'- agCGCG-GUgGCUGGaGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 37847 0.71 0.398659
Target:  5'- gCGUGCCACU--CCUCGAUGUGGGgCu -3'
miRNA:   3'- aGCGCGGUGGcuGGAGCUGUAUCUgG- -5'
7196 3' -55.6 NC_001900.1 + 3233 0.71 0.407823
Target:  5'- cCGCaUgGCCGACCUCGGCAacccguucGACCu -3'
miRNA:   3'- aGCGcGgUGGCUGGAGCUGUau------CUGG- -5'
7196 3' -55.6 NC_001900.1 + 7138 0.71 0.417117
Target:  5'- -gGuCGCCAUCGGCCggaUCGugAUgaAGGCCa -3'
miRNA:   3'- agC-GCGGUGGCUGG---AGCugUA--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16455 0.71 0.42654
Target:  5'- aCGuCGaCUACCucaaccacauCCUCGACGUGGGCCa -3'
miRNA:   3'- aGC-GC-GGUGGcu--------GGAGCUGUAUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.