Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7196 | 3' | -55.6 | NC_001900.1 | + | 47455 | 0.68 | 0.548244 |
Target: 5'- gUCGCcaccgGCCgagaaGCCGACCUCGaACAgcgaggAGAUCc -3' miRNA: 3'- -AGCG-----CGG-----UGGCUGGAGC-UGUa-----UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 2641 | 0.67 | 0.635092 |
Target: 5'- -gGCGCagaggUACCGagGCCagagCGACGUGGACUg -3' miRNA: 3'- agCGCG-----GUGGC--UGGa---GCUGUAUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 17639 | 0.67 | 0.631809 |
Target: 5'- aUCGCGCUGCCGcgugaugaggcgcuACCgaUCGAUGUgcAGGCUg -3' miRNA: 3'- -AGCGCGGUGGC--------------UGG--AGCUGUA--UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 21944 | 0.67 | 0.602294 |
Target: 5'- aUCGCGaugaGCCGugaGgCUgGGCGUGGGCCa -3' miRNA: 3'- -AGCGCgg--UGGC---UgGAgCUGUAUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 36117 | 0.68 | 0.591399 |
Target: 5'- aCGCGUacUCaGCCUCGACAcGGACUg -3' miRNA: 3'- aGCGCGguGGcUGGAGCUGUaUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 40991 | 0.67 | 0.602294 |
Target: 5'- aUCGCGUgGCCuucguuGGCCUUGcCGUcAGGCCc -3' miRNA: 3'- -AGCGCGgUGG------CUGGAGCuGUA-UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 6739 | 0.68 | 0.591399 |
Target: 5'- gUCGauuGCCAaCGACCUCGAUG-AGAUCc -3' miRNA: 3'- -AGCg--CGGUgGCUGGAGCUGUaUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 26798 | 0.68 | 0.580539 |
Target: 5'- cUC-CGUCACuccaCGACCUCGGCcaucgcUGGGCCg -3' miRNA: 3'- -AGcGCGGUG----GCUGGAGCUGu-----AUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 39201 | 0.68 | 0.558953 |
Target: 5'- uUCGaGCCGCCG-CgUCGGuCAUcGACCg -3' miRNA: 3'- -AGCgCGGUGGCuGgAGCU-GUAuCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 32410 | 0.67 | 0.644938 |
Target: 5'- ---aGCCGCuugaaguCGGCCUUGGCcUGGGCCg -3' miRNA: 3'- agcgCGGUG-------GCUGGAGCUGuAUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 33935 | 0.66 | 0.667864 |
Target: 5'- gCGUGCCucggcuggugugGCCGACgCUCGACca--GCCg -3' miRNA: 3'- aGCGCGG------------UGGCUG-GAGCUGuaucUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 6099 | 0.66 | 0.678736 |
Target: 5'- uUCGCGUC-CC--CCUCGACGgAGGCg -3' miRNA: 3'- -AGCGCGGuGGcuGGAGCUGUaUCUGg -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 12513 | 0.66 | 0.721676 |
Target: 5'- gCGgGCCACCcGCaaagcgaugaUCGGCugggAGACCa -3' miRNA: 3'- aGCgCGGUGGcUGg---------AGCUGua--UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 3157 | 0.66 | 0.721676 |
Target: 5'- cUCGCgGCCAUCGAagUCUUGAgucGGACCc -3' miRNA: 3'- -AGCG-CGGUGGCU--GGAGCUguaUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 35628 | 0.66 | 0.721676 |
Target: 5'- -aGCaCCGCguCGGCCUCGAUGUcGAUCa -3' miRNA: 3'- agCGcGGUG--GCUGGAGCUGUAuCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 33517 | 0.66 | 0.711044 |
Target: 5'- -gGCuCCACCG-CC-CGGCGagAGGCCg -3' miRNA: 3'- agCGcGGUGGCuGGaGCUGUa-UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 16657 | 0.66 | 0.700337 |
Target: 5'- gUCGgGCU-CCGACgC-CGACA-AGGCCa -3' miRNA: 3'- -AGCgCGGuGGCUG-GaGCUGUaUCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 32109 | 0.66 | 0.700337 |
Target: 5'- -aGCGCCgaacGCUGACagcagCGACGgcAGGCCa -3' miRNA: 3'- agCGCGG----UGGCUGga---GCUGUa-UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 4363 | 0.66 | 0.700337 |
Target: 5'- -aGCgGCCAgCGGCCUgGcugccGCAggGGACCg -3' miRNA: 3'- agCG-CGGUgGCUGGAgC-----UGUa-UCUGG- -5' |
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7196 | 3' | -55.6 | NC_001900.1 | + | 19830 | 0.66 | 0.678736 |
Target: 5'- cUCGuCGCCGucggaUGACCuUCGACGcGGACUu -3' miRNA: 3'- -AGC-GCGGUg----GCUGG-AGCUGUaUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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