miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7197 5' -56.3 NC_001900.1 + 39575 0.66 0.607645
Target:  5'- cGGCCGugGAcguaagcgucGGUGuagcccagCGGGGCCUCg -3'
miRNA:   3'- cUCGGCugCU----------UCACca------GUCUCGGAGa -5'
7197 5' -56.3 NC_001900.1 + 42691 0.66 0.58555
Target:  5'- --aCCGGgGAGGUGGUCAGcguGCCa-- -3'
miRNA:   3'- cucGGCUgCUUCACCAGUCu--CGGaga -5'
7197 5' -56.3 NC_001900.1 + 27214 0.66 0.584449
Target:  5'- aGGCCcAgGaAAGUGGcucagaaucgaucUCAGAGCCUCUu -3'
miRNA:   3'- cUCGGcUgC-UUCACC-------------AGUCUCGGAGA- -5'
7197 5' -56.3 NC_001900.1 + 42077 0.66 0.58555
Target:  5'- cGGGCCGGUGAcGUGGU-GGAGCC-Cg -3'
miRNA:   3'- -CUCGGCUGCUuCACCAgUCUCGGaGa -5'
7197 5' -56.3 NC_001900.1 + 39783 0.67 0.541901
Target:  5'- -cGCCGAUGGccucUGGUCGGcgcucAGCCUCg -3'
miRNA:   3'- cuCGGCUGCUuc--ACCAGUC-----UCGGAGa -5'
7197 5' -56.3 NC_001900.1 + 14604 0.67 0.531148
Target:  5'- cGAGCCGGgGAuGUGGgaCAGcAGCCUg- -3'
miRNA:   3'- -CUCGGCUgCUuCACCa-GUC-UCGGAga -5'
7197 5' -56.3 NC_001900.1 + 11554 0.67 0.531148
Target:  5'- cGGCCGGCGAcccgaccccGGUGGUCAcugacaAGCCgCUg -3'
miRNA:   3'- cUCGGCUGCU---------UCACCAGUc-----UCGGaGA- -5'
7197 5' -56.3 NC_001900.1 + 21956 0.67 0.552725
Target:  5'- --aCUGGCGGAuUGGUCAGAGCaCUUg -3'
miRNA:   3'- cucGGCUGCUUcACCAGUCUCG-GAGa -5'
7197 5' -56.3 NC_001900.1 + 38514 0.68 0.499385
Target:  5'- gGAGCUGGCGuGG-GGUUgggGGAGCCUg- -3'
miRNA:   3'- -CUCGGCUGCuUCaCCAG---UCUCGGAga -5'
7197 5' -56.3 NC_001900.1 + 4736 0.69 0.419311
Target:  5'- -cGCCGuCGucGUGGUCgacggGGAGCUUCg -3'
miRNA:   3'- cuCGGCuGCuuCACCAG-----UCUCGGAGa -5'
7197 5' -56.3 NC_001900.1 + 25951 0.72 0.277796
Target:  5'- aGGGCCGACcaGAAGUGGUUccacgucugcuGGAGCC-Cg -3'
miRNA:   3'- -CUCGGCUG--CUUCACCAG-----------UCUCGGaGa -5'
7197 5' -56.3 NC_001900.1 + 40037 0.74 0.202755
Target:  5'- -cGCCGACGAuGUcGGUCAcGGCCUCc -3'
miRNA:   3'- cuCGGCUGCUuCA-CCAGUcUCGGAGa -5'
7197 5' -56.3 NC_001900.1 + 25396 1.08 0.000712
Target:  5'- cGAGCCGACGAAGUGGUCAGAGCCUCUa -3'
miRNA:   3'- -CUCGGCUGCUUCACCAGUCUCGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.