Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 40037 | 0.74 | 0.202755 |
Target: 5'- -cGCCGACGAuGUcGGUCAcGGCCUCc -3' miRNA: 3'- cuCGGCUGCUuCA-CCAGUcUCGGAGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 11554 | 0.67 | 0.531148 |
Target: 5'- cGGCCGGCGAcccgaccccGGUGGUCAcugacaAGCCgCUg -3' miRNA: 3'- cUCGGCUGCU---------UCACCAGUc-----UCGGaGA- -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 21956 | 0.67 | 0.552725 |
Target: 5'- --aCUGGCGGAuUGGUCAGAGCaCUUg -3' miRNA: 3'- cucGGCUGCUUcACCAGUCUCG-GAGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 27214 | 0.66 | 0.584449 |
Target: 5'- aGGCCcAgGaAAGUGGcucagaaucgaucUCAGAGCCUCUu -3' miRNA: 3'- cUCGGcUgC-UUCACC-------------AGUCUCGGAGA- -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 42077 | 0.66 | 0.58555 |
Target: 5'- cGGGCCGGUGAcGUGGU-GGAGCC-Cg -3' miRNA: 3'- -CUCGGCUGCUuCACCAgUCUCGGaGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 39575 | 0.66 | 0.607645 |
Target: 5'- cGGCCGugGAcguaagcgucGGUGuagcccagCGGGGCCUCg -3' miRNA: 3'- cUCGGCugCU----------UCACca------GUCUCGGAGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 42691 | 0.66 | 0.58555 |
Target: 5'- --aCCGGgGAGGUGGUCAGcguGCCa-- -3' miRNA: 3'- cucGGCUgCUUCACCAGUCu--CGGaga -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 39783 | 0.67 | 0.541901 |
Target: 5'- -cGCCGAUGGccucUGGUCGGcgcucAGCCUCg -3' miRNA: 3'- cuCGGCUGCUuc--ACCAGUC-----UCGGAGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 14604 | 0.67 | 0.531148 |
Target: 5'- cGAGCCGGgGAuGUGGgaCAGcAGCCUg- -3' miRNA: 3'- -CUCGGCUgCUuCACCa-GUC-UCGGAga -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 38514 | 0.68 | 0.499385 |
Target: 5'- gGAGCUGGCGuGG-GGUUgggGGAGCCUg- -3' miRNA: 3'- -CUCGGCUGCuUCaCCAG---UCUCGGAga -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 4736 | 0.69 | 0.419311 |
Target: 5'- -cGCCGuCGucGUGGUCgacggGGAGCUUCg -3' miRNA: 3'- cuCGGCuGCuuCACCAG-----UCUCGGAGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 25951 | 0.72 | 0.277796 |
Target: 5'- aGGGCCGACcaGAAGUGGUUccacgucugcuGGAGCC-Cg -3' miRNA: 3'- -CUCGGCUG--CUUCACCAG-----------UCUCGGaGa -5' |
|||||||
7197 | 5' | -56.3 | NC_001900.1 | + | 25396 | 1.08 | 0.000712 |
Target: 5'- cGAGCCGACGAAGUGGUCAGAGCCUCUa -3' miRNA: 3'- -CUCGGCUGCUUCACCAGUCUCGGAGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home