miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 20255 0.7 0.458814
Target:  5'- aCUACCuGGCCAAGUgGGUGAUGaaCCACc -3'
miRNA:   3'- -GGUGG-CCGGUUUGgCCACUAUg-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 47884 0.7 0.458814
Target:  5'- gCC-CCGGCCGcuuCCGGcg--GCCCACc -3'
miRNA:   3'- -GGuGGCCGGUuu-GGCCacuaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 35741 0.7 0.458814
Target:  5'- uCCGCUGGCCGuAGCCaggGGUGAacACgCCGCc -3'
miRNA:   3'- -GGUGGCCGGU-UUGG---CCACUa-UG-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 41116 0.7 0.445981
Target:  5'- gCCACCGGCCGcggaguagaugaugAACCGGUuGAcaucgaguccgUACUCGg -3'
miRNA:   3'- -GGUGGCCGGU--------------UUGGCCA-CU-----------AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 42739 0.7 0.439155
Target:  5'- aCAgCGGCCGuGGCCGGUGcgGCUgCGCc -3'
miRNA:   3'- gGUgGCCGGU-UUGGCCACuaUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 3282 0.7 0.439155
Target:  5'- gUCACCGGCCGcgacuuccGCUGGUcGAUccCCCACc -3'
miRNA:   3'- -GGUGGCCGGUu-------UGGCCA-CUAu-GGGUG- -5'
7198 3' -55.6 NC_001900.1 + 3503 0.7 0.439155
Target:  5'- cCCGCagGGUCuGGCCGGUGAcAUCCAg -3'
miRNA:   3'- -GGUGg-CCGGuUUGGCCACUaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 9769 0.7 0.419985
Target:  5'- cCCACgGGCuCGGcgcggucCCGGUGGU-CCCGCu -3'
miRNA:   3'- -GGUGgCCG-GUUu------GGCCACUAuGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 24351 0.71 0.410592
Target:  5'- aCCACCaGcGCCGAugacGCCaGUGAUcugugugaccGCCCACg -3'
miRNA:   3'- -GGUGG-C-CGGUU----UGGcCACUA----------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 25692 0.71 0.401331
Target:  5'- gUCACCGGCCGcuugGACCugacggucuuGGUGuUGCCgACg -3'
miRNA:   3'- -GGUGGCCGGU----UUGG----------CCACuAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 31810 0.71 0.392203
Target:  5'- -gACCGGcCCGAGcCCGGUGAagaACUCGCc -3'
miRNA:   3'- ggUGGCC-GGUUU-GGCCACUa--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 23176 0.71 0.383212
Target:  5'- -aGCCGGCCGAGCagauCGGUGAgcugGCCggUACg -3'
miRNA:   3'- ggUGGCCGGUUUG----GCCACUa---UGG--GUG- -5'
7198 3' -55.6 NC_001900.1 + 43483 0.71 0.383212
Target:  5'- uCgGCCGGCCAGcUCGGUGcgccGCCUGCu -3'
miRNA:   3'- -GgUGGCCGGUUuGGCCACua--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 8778 0.71 0.383212
Target:  5'- gCCgACCGGCCAca-CGGUcGAggacaugACCCGCg -3'
miRNA:   3'- -GG-UGGCCGGUuugGCCA-CUa------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 18348 0.72 0.348642
Target:  5'- aCCcCCGGCCuuucgGGGCCGGUGGguucGgCCACu -3'
miRNA:   3'- -GGuGGCCGG-----UUUGGCCACUa---UgGGUG- -5'
7198 3' -55.6 NC_001900.1 + 17466 0.72 0.348642
Target:  5'- -aACCGGCCGAACCGccaGAaGCUCACc -3'
miRNA:   3'- ggUGGCCGGUUUGGCca-CUaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 30716 0.72 0.33221
Target:  5'- cCCACCGGCCccgaaAGGCCGGgGG--UCCACc -3'
miRNA:   3'- -GGUGGCCGG-----UUUGGCCaCUauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47335 0.72 0.33221
Target:  5'- cCCACUGGgCAGACCGaugcuguucGcGAUGCCUACg -3'
miRNA:   3'- -GGUGGCCgGUUUGGC---------CaCUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 19789 0.72 0.33221
Target:  5'- aCCGCCGGCuCAAgacGCCGG-GGUugAUCUACg -3'
miRNA:   3'- -GGUGGCCG-GUU---UGGCCaCUA--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 3928 0.72 0.324211
Target:  5'- -aGCUGGCCGAgacGCCGGU---ACCCGCc -3'
miRNA:   3'- ggUGGCCGGUU---UGGCCAcuaUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.