miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 42518 0.67 0.617876
Target:  5'- aCgGCUGGCUguAGGCCGGUugGAUGCCg-- -3'
miRNA:   3'- -GgUGGCCGG--UUUGGCCA--CUAUGGgug -5'
7198 3' -55.6 NC_001900.1 + 47794 0.67 0.606879
Target:  5'- gCUGCCGGUCGAACCaccGA-ACCCGCc -3'
miRNA:   3'- -GGUGGCCGGUUUGGccaCUaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 23597 0.67 0.595904
Target:  5'- gCCACgcuggCGGCuCAGGCCGGUGcgACgaCCAa -3'
miRNA:   3'- -GGUG-----GCCG-GUUUGGCCACuaUG--GGUg -5'
7198 3' -55.6 NC_001900.1 + 47458 0.67 0.589333
Target:  5'- gCCACCGGCCGAgaaGCCgaccucgaacagcgaGGaGAUccgGCCCGa -3'
miRNA:   3'- -GGUGGCCGGUU---UGG---------------CCaCUA---UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 45655 0.68 0.563198
Target:  5'- aCCugUGGCC---CCGGUGAUGuaCACc -3'
miRNA:   3'- -GGugGCCGGuuuGGCCACUAUggGUG- -5'
7198 3' -55.6 NC_001900.1 + 42562 0.68 0.563198
Target:  5'- gCCAgCgGGCCGAGCUGG-GggACCgCGCc -3'
miRNA:   3'- -GGU-GgCCGGUUUGGCCaCuaUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 23323 0.68 0.563198
Target:  5'- gCC-CCGGCUggGCCGaGUucuAUACCgGCg -3'
miRNA:   3'- -GGuGGCCGGuuUGGC-CAc--UAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 24590 0.68 0.552396
Target:  5'- aCGCUGGCCAcACCuGGUcGUugCCGa -3'
miRNA:   3'- gGUGGCCGGUuUGG-CCAcUAugGGUg -5'
7198 3' -55.6 NC_001900.1 + 19481 0.68 0.552396
Target:  5'- gCCGgCGGCU--GCCGGUGGa--CCGCu -3'
miRNA:   3'- -GGUgGCCGGuuUGGCCACUaugGGUG- -5'
7198 3' -55.6 NC_001900.1 + 14242 0.68 0.552396
Target:  5'- aCCGa-GGUCuccgagauccuGAGCCGGUG-UGCCCGCg -3'
miRNA:   3'- -GGUggCCGG-----------UUUGGCCACuAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 13452 0.68 0.552396
Target:  5'- gUCACCGGCCuGAUCGGUGGcgaUGagUACg -3'
miRNA:   3'- -GGUGGCCGGuUUGGCCACU---AUggGUG- -5'
7198 3' -55.6 NC_001900.1 + 18024 0.68 0.541658
Target:  5'- -uGCCGGUCAucguGCCGGUGG--UCCAg -3'
miRNA:   3'- ggUGGCCGGUu---UGGCCACUauGGGUg -5'
7198 3' -55.6 NC_001900.1 + 1213 0.68 0.53099
Target:  5'- gCACCGGCaacgCAGgcACCGGUGGUguACUCGg -3'
miRNA:   3'- gGUGGCCG----GUU--UGGCCACUA--UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 24721 0.69 0.509892
Target:  5'- gUCAUCGGC---GCUGGUGGUACCgCAg -3'
miRNA:   3'- -GGUGGCCGguuUGGCCACUAUGG-GUg -5'
7198 3' -55.6 NC_001900.1 + 37747 0.69 0.509892
Target:  5'- -aACCGGCCAugUCGGUGAacgaaUCACg -3'
miRNA:   3'- ggUGGCCGGUuuGGCCACUaug--GGUG- -5'
7198 3' -55.6 NC_001900.1 + 25552 0.69 0.499475
Target:  5'- gCCugCaGCCucACCGGggaUGGUGCCgACg -3'
miRNA:   3'- -GGugGcCGGuuUGGCC---ACUAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 22814 0.69 0.49327
Target:  5'- cCCGCCGGCCGAGCgcgagaagaaggcugCGGcGAgUGCCauCACg -3'
miRNA:   3'- -GGUGGCCGGUUUG---------------GCCaCU-AUGG--GUG- -5'
7198 3' -55.6 NC_001900.1 + 29600 0.69 0.489154
Target:  5'- gCCGCCGGCCc-AUCGGguUGAugaugUACCCGu -3'
miRNA:   3'- -GGUGGCCGGuuUGGCC--ACU-----AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 7142 0.69 0.489154
Target:  5'- gCCAUCGGCCGGAUC-GUGAUgaagGCCaGCg -3'
miRNA:   3'- -GGUGGCCGGUUUGGcCACUA----UGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 44926 0.69 0.467813
Target:  5'- aCCGCCGGCCGcuucGCCGGUcGGcagaugaaccaacUGCCaGCg -3'
miRNA:   3'- -GGUGGCCGGUu---UGGCCA-CU-------------AUGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.