Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7198 | 3' | -55.6 | NC_001900.1 | + | 8778 | 0.71 | 0.383212 |
Target: 5'- gCCgACCGGCCAca-CGGUcGAggacaugACCCGCg -3' miRNA: 3'- -GG-UGGCCGGUuugGCCA-CUa------UGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 31810 | 0.71 | 0.392203 |
Target: 5'- -gACCGGcCCGAGcCCGGUGAagaACUCGCc -3' miRNA: 3'- ggUGGCC-GGUUU-GGCCACUa--UGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 25692 | 0.71 | 0.401331 |
Target: 5'- gUCACCGGCCGcuugGACCugacggucuuGGUGuUGCCgACg -3' miRNA: 3'- -GGUGGCCGGU----UUGG----------CCACuAUGGgUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 24351 | 0.71 | 0.410592 |
Target: 5'- aCCACCaGcGCCGAugacGCCaGUGAUcugugugaccGCCCACg -3' miRNA: 3'- -GGUGG-C-CGGUU----UGGcCACUA----------UGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 9769 | 0.7 | 0.419985 |
Target: 5'- cCCACgGGCuCGGcgcggucCCGGUGGU-CCCGCu -3' miRNA: 3'- -GGUGgCCG-GUUu------GGCCACUAuGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 3282 | 0.7 | 0.439155 |
Target: 5'- gUCACCGGCCGcgacuuccGCUGGUcGAUccCCCACc -3' miRNA: 3'- -GGUGGCCGGUu-------UGGCCA-CUAu-GGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 42739 | 0.7 | 0.439155 |
Target: 5'- aCAgCGGCCGuGGCCGGUGcgGCUgCGCc -3' miRNA: 3'- gGUgGCCGGU-UUGGCCACuaUGG-GUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 3503 | 0.7 | 0.439155 |
Target: 5'- cCCGCagGGUCuGGCCGGUGAcAUCCAg -3' miRNA: 3'- -GGUGg-CCGGuUUGGCCACUaUGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 41116 | 0.7 | 0.445981 |
Target: 5'- gCCACCGGCCGcggaguagaugaugAACCGGUuGAcaucgaguccgUACUCGg -3' miRNA: 3'- -GGUGGCCGGU--------------UUGGCCA-CU-----------AUGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 47884 | 0.7 | 0.458814 |
Target: 5'- gCC-CCGGCCGcuuCCGGcg--GCCCACc -3' miRNA: 3'- -GGuGGCCGGUuu-GGCCacuaUGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 20255 | 0.7 | 0.458814 |
Target: 5'- aCUACCuGGCCAAGUgGGUGAUGaaCCACc -3' miRNA: 3'- -GGUGG-CCGGUUUGgCCACUAUg-GGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 35741 | 0.7 | 0.458814 |
Target: 5'- uCCGCUGGCCGuAGCCaggGGUGAacACgCCGCc -3' miRNA: 3'- -GGUGGCCGGU-UUGG---CCACUa-UG-GGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 44926 | 0.69 | 0.467813 |
Target: 5'- aCCGCCGGCCGcuucGCCGGUcGGcagaugaaccaacUGCCaGCg -3' miRNA: 3'- -GGUGGCCGGUu---UGGCCA-CU-------------AUGGgUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 29600 | 0.69 | 0.489154 |
Target: 5'- gCCGCCGGCCc-AUCGGguUGAugaugUACCCGu -3' miRNA: 3'- -GGUGGCCGGuuUGGCC--ACU-----AUGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 7142 | 0.69 | 0.489154 |
Target: 5'- gCCAUCGGCCGGAUC-GUGAUgaagGCCaGCg -3' miRNA: 3'- -GGUGGCCGGUUUGGcCACUA----UGGgUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 22814 | 0.69 | 0.49327 |
Target: 5'- cCCGCCGGCCGAGCgcgagaagaaggcugCGGcGAgUGCCauCACg -3' miRNA: 3'- -GGUGGCCGGUUUG---------------GCCaCU-AUGG--GUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 25552 | 0.69 | 0.499475 |
Target: 5'- gCCugCaGCCucACCGGggaUGGUGCCgACg -3' miRNA: 3'- -GGugGcCGGuuUGGCC---ACUAUGGgUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 24721 | 0.69 | 0.509892 |
Target: 5'- gUCAUCGGC---GCUGGUGGUACCgCAg -3' miRNA: 3'- -GGUGGCCGguuUGGCCACUAUGG-GUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 37747 | 0.69 | 0.509892 |
Target: 5'- -aACCGGCCAugUCGGUGAacgaaUCACg -3' miRNA: 3'- ggUGGCCGGUuuGGCCACUaug--GGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 1213 | 0.68 | 0.53099 |
Target: 5'- gCACCGGCaacgCAGgcACCGGUGGUguACUCGg -3' miRNA: 3'- gGUGGCCG----GUU--UGGCCACUA--UGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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