miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 9769 0.7 0.419985
Target:  5'- cCCACgGGCuCGGcgcggucCCGGUGGU-CCCGCu -3'
miRNA:   3'- -GGUGgCCG-GUUu------GGCCACUAuGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 3928 0.72 0.324211
Target:  5'- -aGCUGGCCGAgacGCCGGU---ACCCGCc -3'
miRNA:   3'- ggUGGCCGGUU---UGGCCAcuaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 4185 0.66 0.705458
Target:  5'- uCUACCGGCaaccCCGGUaGGcGCaCCACu -3'
miRNA:   3'- -GGUGGCCGguuuGGCCA-CUaUG-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 12246 0.67 0.633291
Target:  5'- aCCACgGGCCAGAagaucCCGcacugggucggcgacGUGAgUGCCCAg -3'
miRNA:   3'- -GGUGgCCGGUUU-----GGC---------------CACU-AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 35741 0.7 0.458814
Target:  5'- uCCGCUGGCCGuAGCCaggGGUGAacACgCCGCc -3'
miRNA:   3'- -GGUGGCCGGU-UUGG---CCACUa-UG-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 40779 0.73 0.301077
Target:  5'- aCCACCaGGCCAuacgggGACCGGUGcaGCUCGu -3'
miRNA:   3'- -GGUGG-CCGGU------UUGGCCACuaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 23323 0.68 0.563198
Target:  5'- gCC-CCGGCUggGCCGaGUucuAUACCgGCg -3'
miRNA:   3'- -GGuGGCCGGuuUGGC-CAc--UAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 35617 0.74 0.268115
Target:  5'- gCCACCGaUCAGGCCGGUGAcaacgacgcccuucuUGCCC-Cg -3'
miRNA:   3'- -GGUGGCcGGUUUGGCCACU---------------AUGGGuG- -5'
7198 3' -55.6 NC_001900.1 + 48329 0.74 0.26539
Target:  5'- cUCACCGGuCCAAGuuGGUGAUgacAUUCACu -3'
miRNA:   3'- -GGUGGCC-GGUUUggCCACUA---UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 7142 0.69 0.489154
Target:  5'- gCCAUCGGCCGGAUC-GUGAUgaagGCCaGCg -3'
miRNA:   3'- -GGUGGCCGGUUUGGcCACUA----UGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 17259 0.66 0.683773
Target:  5'- uUCACCgGGCuCGGGCCGGUcaucucgACCgGCa -3'
miRNA:   3'- -GGUGG-CCG-GUUUGGCCAcua----UGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 43483 0.71 0.383212
Target:  5'- uCgGCCGGCCAGcUCGGUGcgccGCCUGCu -3'
miRNA:   3'- -GgUGGCCGGUUuGGCCACua--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47335 0.72 0.33221
Target:  5'- cCCACUGGgCAGACCGaugcuguucGcGAUGCCUACg -3'
miRNA:   3'- -GGUGGCCgGUUUGGC---------CaCUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 37747 0.69 0.509892
Target:  5'- -aACCGGCCAugUCGGUGAacgaaUCACg -3'
miRNA:   3'- ggUGGCCGGUuuGGCCACUaug--GGUG- -5'
7198 3' -55.6 NC_001900.1 + 28048 0.67 0.639898
Target:  5'- gCCACCGucaCAGGCCG-UGAgGCCCAg -3'
miRNA:   3'- -GGUGGCcg-GUUUGGCcACUaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 47006 0.66 0.705458
Target:  5'- gCugCGGUCuGAACCcuGGUGuagGCCCAg -3'
miRNA:   3'- gGugGCCGG-UUUGG--CCACua-UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 47458 0.67 0.589333
Target:  5'- gCCACCGGCCGAgaaGCCgaccucgaacagcgaGGaGAUccgGCCCGa -3'
miRNA:   3'- -GGUGGCCGGUU---UGG---------------CCaCUA---UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 8778 0.71 0.383212
Target:  5'- gCCgACCGGCCAca-CGGUcGAggacaugACCCGCg -3'
miRNA:   3'- -GG-UGGCCGGUuugGCCA-CUa------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 24351 0.71 0.410592
Target:  5'- aCCACCaGcGCCGAugacGCCaGUGAUcugugugaccGCCCACg -3'
miRNA:   3'- -GGUGG-C-CGGUU----UGGcCACUA----------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 31810 0.71 0.392203
Target:  5'- -gACCGGcCCGAGcCCGGUGAagaACUCGCc -3'
miRNA:   3'- ggUGGCC-GGUUU-GGCCACUa--UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.