miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 4185 0.66 0.705458
Target:  5'- uCUACCGGCaaccCCGGUaGGcGCaCCACu -3'
miRNA:   3'- -GGUGGCCGguuuGGCCA-CUaUG-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 32231 0.66 0.694646
Target:  5'- gUACC-GCCAcgcCCGGUGGuUGCCCGu -3'
miRNA:   3'- gGUGGcCGGUuu-GGCCACU-AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 967 0.66 0.694646
Target:  5'- gCUGCUGGCCuacGGCCGGcugcGGUACUgCGCg -3'
miRNA:   3'- -GGUGGCCGGu--UUGGCCa---CUAUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 17259 0.66 0.683773
Target:  5'- uUCACCgGGCuCGGGCCGGUcaucucgACCgGCa -3'
miRNA:   3'- -GGUGG-CCG-GUUUGGCCAcua----UGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 4138 0.66 0.672852
Target:  5'- gCCgACCGGCgAAgcgGCCGGcGGUGacCCCAa -3'
miRNA:   3'- -GG-UGGCCGgUU---UGGCCaCUAU--GGGUg -5'
7198 3' -55.6 NC_001900.1 + 43098 0.66 0.648703
Target:  5'- gCUugCGGCCuGGCCGGUucagcagccaGCCCAg -3'
miRNA:   3'- -GGugGCCGGuUUGGCCAcua-------UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 28048 0.67 0.639898
Target:  5'- gCCACCGucaCAGGCCG-UGAgGCCCAg -3'
miRNA:   3'- -GGUGGCcg-GUUUGGCcACUaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 45429 0.78 0.139595
Target:  5'- uCCACCGGCCAuGCCGG-GGUaggGCUCAa -3'
miRNA:   3'- -GGUGGCCGGUuUGGCCaCUA---UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 23323 0.68 0.563198
Target:  5'- gCC-CCGGCUggGCCGaGUucuAUACCgGCg -3'
miRNA:   3'- -GGuGGCCGGuuUGGC-CAc--UAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 18024 0.68 0.541658
Target:  5'- -uGCCGGUCAucguGCCGGUGG--UCCAg -3'
miRNA:   3'- ggUGGCCGGUu---UGGCCACUauGGGUg -5'
7198 3' -55.6 NC_001900.1 + 1213 0.68 0.53099
Target:  5'- gCACCGGCaacgCAGgcACCGGUGGUguACUCGg -3'
miRNA:   3'- gGUGGCCG----GUU--UGGCCACUA--UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 37747 0.69 0.509892
Target:  5'- -aACCGGCCAugUCGGUGAacgaaUCACg -3'
miRNA:   3'- ggUGGCCGGUuuGGCCACUaug--GGUG- -5'
7198 3' -55.6 NC_001900.1 + 24721 0.69 0.509892
Target:  5'- gUCAUCGGC---GCUGGUGGUACCgCAg -3'
miRNA:   3'- -GGUGGCCGguuUGGCCACUAUGG-GUg -5'
7198 3' -55.6 NC_001900.1 + 29600 0.69 0.489154
Target:  5'- gCCGCCGGCCc-AUCGGguUGAugaugUACCCGu -3'
miRNA:   3'- -GGUGGCCGGuuUGGCC--ACU-----AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 7142 0.69 0.489154
Target:  5'- gCCAUCGGCCGGAUC-GUGAUgaagGCCaGCg -3'
miRNA:   3'- -GGUGGCCGGUUUGGcCACUA----UGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 35741 0.7 0.458814
Target:  5'- uCCGCUGGCCGuAGCCaggGGUGAacACgCCGCc -3'
miRNA:   3'- -GGUGGCCGGU-UUGG---CCACUa-UG-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 36808 0.67 0.636595
Target:  5'- gUCGCCGacCCAGugCGGgaucuucuggcccgUGGUACCCAUc -3'
miRNA:   3'- -GGUGGCc-GGUUugGCC--------------ACUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 24590 0.68 0.552396
Target:  5'- aCGCUGGCCAcACCuGGUcGUugCCGa -3'
miRNA:   3'- gGUGGCCGGUuUGG-CCAcUAugGGUg -5'
7198 3' -55.6 NC_001900.1 + 42562 0.68 0.563198
Target:  5'- gCCAgCgGGCCGAGCUGG-GggACCgCGCc -3'
miRNA:   3'- -GGU-GgCCGGUUUGGCCaCuaUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 45655 0.68 0.563198
Target:  5'- aCCugUGGCC---CCGGUGAUGuaCACc -3'
miRNA:   3'- -GGugGCCGGuuuGGCCACUAUggGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.