miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 19481 0.68 0.552396
Target:  5'- gCCGgCGGCU--GCCGGUGGa--CCGCu -3'
miRNA:   3'- -GGUgGCCGGuuUGGCCACUaugGGUG- -5'
7198 3' -55.6 NC_001900.1 + 19789 0.72 0.33221
Target:  5'- aCCGCCGGCuCAAgacGCCGG-GGUugAUCUACg -3'
miRNA:   3'- -GGUGGCCG-GUU---UGGCCaCUA--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 20255 0.7 0.458814
Target:  5'- aCUACCuGGCCAAGUgGGUGAUGaaCCACc -3'
miRNA:   3'- -GGUGG-CCGGUUUGgCCACUAUg-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 21057 0.75 0.209883
Target:  5'- aCACCGGcCCGAACgGcGUGAUcuucguGCCCGCc -3'
miRNA:   3'- gGUGGCC-GGUUUGgC-CACUA------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 22814 0.69 0.49327
Target:  5'- cCCGCCGGCCGAGCgcgagaagaaggcugCGGcGAgUGCCauCACg -3'
miRNA:   3'- -GGUGGCCGGUUUG---------------GCCaCU-AUGG--GUG- -5'
7198 3' -55.6 NC_001900.1 + 23176 0.71 0.383212
Target:  5'- -aGCCGGCCGAGCagauCGGUGAgcugGCCggUACg -3'
miRNA:   3'- ggUGGCCGGUUUG----GCCACUa---UGG--GUG- -5'
7198 3' -55.6 NC_001900.1 + 23323 0.68 0.563198
Target:  5'- gCC-CCGGCUggGCCGaGUucuAUACCgGCg -3'
miRNA:   3'- -GGuGGCCGGuuUGGC-CAc--UAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 23597 0.67 0.595904
Target:  5'- gCCACgcuggCGGCuCAGGCCGGUGcgACgaCCAa -3'
miRNA:   3'- -GGUG-----GCCG-GUUUGGCCACuaUG--GGUg -5'
7198 3' -55.6 NC_001900.1 + 24060 1.12 0.000574
Target:  5'- aCCACCGGCCAAACCGGUGAUACCCACu -3'
miRNA:   3'- -GGUGGCCGGUUUGGCCACUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 24351 0.71 0.410592
Target:  5'- aCCACCaGcGCCGAugacGCCaGUGAUcugugugaccGCCCACg -3'
miRNA:   3'- -GGUGG-C-CGGUU----UGGcCACUA----------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 24590 0.68 0.552396
Target:  5'- aCGCUGGCCAcACCuGGUcGUugCCGa -3'
miRNA:   3'- gGUGGCCGGUuUGG-CCAcUAugGGUg -5'
7198 3' -55.6 NC_001900.1 + 24721 0.69 0.509892
Target:  5'- gUCAUCGGC---GCUGGUGGUACCgCAg -3'
miRNA:   3'- -GGUGGCCGguuUGGCCACUAUGG-GUg -5'
7198 3' -55.6 NC_001900.1 + 25008 0.77 0.160231
Target:  5'- aUCACCGGUUuGGCCGGUGGU-CCCGg -3'
miRNA:   3'- -GGUGGCCGGuUUGGCCACUAuGGGUg -5'
7198 3' -55.6 NC_001900.1 + 25453 0.66 0.649803
Target:  5'- gCCACCGaCCucgacauAGACCccgucGGUGAUGCCgACc -3'
miRNA:   3'- -GGUGGCcGG-------UUUGG-----CCACUAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 25467 0.74 0.24567
Target:  5'- gCACCGGCCuGAGCCGccagcGUGGcuCCCACg -3'
miRNA:   3'- gGUGGCCGG-UUUGGC-----CACUauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 25552 0.69 0.499475
Target:  5'- gCCugCaGCCucACCGGggaUGGUGCCgACg -3'
miRNA:   3'- -GGugGcCGGuuUGGCC---ACUAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 25692 0.71 0.401331
Target:  5'- gUCACCGGCCGcuugGACCugacggucuuGGUGuUGCCgACg -3'
miRNA:   3'- -GGUGGCCGGU----UUGG----------CCACuAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 27919 0.78 0.132044
Target:  5'- uCCACCGGCCAggaAGCUGGUGucgGUGCCUc- -3'
miRNA:   3'- -GGUGGCCGGU---UUGGCCAC---UAUGGGug -5'
7198 3' -55.6 NC_001900.1 + 28048 0.67 0.639898
Target:  5'- gCCACCGucaCAGGCCG-UGAgGCCCAg -3'
miRNA:   3'- -GGUGGCcg-GUUUGGCcACUaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 28126 0.66 0.694646
Target:  5'- aCCGcCCGGaCGAAcCCGGUGAgccaggAgCCGCc -3'
miRNA:   3'- -GGU-GGCCgGUUU-GGCCACUa-----UgGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.