Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7198 | 3' | -55.6 | NC_001900.1 | + | 45429 | 0.78 | 0.139595 |
Target: 5'- uCCACCGGCCAuGCCGG-GGUaggGCUCAa -3' miRNA: 3'- -GGUGGCCGGUuUGGCCaCUA---UGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 3503 | 0.7 | 0.439155 |
Target: 5'- cCCGCagGGUCuGGCCGGUGAcAUCCAg -3' miRNA: 3'- -GGUGg-CCGGuUUGGCCACUaUGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 35741 | 0.7 | 0.458814 |
Target: 5'- uCCGCUGGCCGuAGCCaggGGUGAacACgCCGCc -3' miRNA: 3'- -GGUGGCCGGU-UUGG---CCACUa-UG-GGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 47006 | 0.66 | 0.705458 |
Target: 5'- gCugCGGUCuGAACCcuGGUGuagGCCCAg -3' miRNA: 3'- gGugGCCGG-UUUGG--CCACua-UGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 25467 | 0.74 | 0.24567 |
Target: 5'- gCACCGGCCuGAGCCGccagcGUGGcuCCCACg -3' miRNA: 3'- gGUGGCCGG-UUUGGC-----CACUauGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 48329 | 0.74 | 0.26539 |
Target: 5'- cUCACCGGuCCAAGuuGGUGAUgacAUUCACu -3' miRNA: 3'- -GGUGGCC-GGUUUggCCACUA---UGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 40779 | 0.73 | 0.301077 |
Target: 5'- aCCACCaGGCCAuacgggGACCGGUGcaGCUCGu -3' miRNA: 3'- -GGUGG-CCGGU------UUGGCCACuaUGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 3928 | 0.72 | 0.324211 |
Target: 5'- -aGCUGGCCGAgacGCCGGU---ACCCGCc -3' miRNA: 3'- ggUGGCCGGUU---UGGCCAcuaUGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 30716 | 0.72 | 0.33221 |
Target: 5'- cCCACCGGCCccgaaAGGCCGGgGG--UCCACc -3' miRNA: 3'- -GGUGGCCGG-----UUUGGCCaCUauGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 3282 | 0.7 | 0.439155 |
Target: 5'- gUCACCGGCCGcgacuuccGCUGGUcGAUccCCCACc -3' miRNA: 3'- -GGUGGCCGGUu-------UGGCCA-CUAu-GGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 23176 | 0.71 | 0.383212 |
Target: 5'- -aGCCGGCCGAGCagauCGGUGAgcugGCCggUACg -3' miRNA: 3'- ggUGGCCGGUUUG----GCCACUa---UGG--GUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 19789 | 0.72 | 0.33221 |
Target: 5'- aCCGCCGGCuCAAgacGCCGG-GGUugAUCUACg -3' miRNA: 3'- -GGUGGCCG-GUU---UGGCCaCUA--UGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 25008 | 0.77 | 0.160231 |
Target: 5'- aUCACCGGUUuGGCCGGUGGU-CCCGg -3' miRNA: 3'- -GGUGGCCGGuUUGGCCACUAuGGGUg -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 25692 | 0.71 | 0.401331 |
Target: 5'- gUCACCGGCCGcuugGACCugacggucuuGGUGuUGCCgACg -3' miRNA: 3'- -GGUGGCCGGU----UUGG----------CCACuAUGGgUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 41083 | 0.76 | 0.183579 |
Target: 5'- -uGCgGGCCAGGCCGGUGAc-CUCGCg -3' miRNA: 3'- ggUGgCCGGUUUGGCCACUauGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 47335 | 0.72 | 0.33221 |
Target: 5'- cCCACUGGgCAGACCGaugcuguucGcGAUGCCUACg -3' miRNA: 3'- -GGUGGCCgGUUUGGC---------CaCUAUGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 9769 | 0.7 | 0.419985 |
Target: 5'- cCCACgGGCuCGGcgcggucCCGGUGGU-CCCGCu -3' miRNA: 3'- -GGUGgCCG-GUUu------GGCCACUAuGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 20255 | 0.7 | 0.458814 |
Target: 5'- aCUACCuGGCCAAGUgGGUGAUGaaCCACc -3' miRNA: 3'- -GGUGG-CCGGUUUGgCCACUAUg-GGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 6006 | 0.75 | 0.22718 |
Target: 5'- -aAUCGGCgCGAGCCGGUGAccUCCGCg -3' miRNA: 3'- ggUGGCCG-GUUUGGCCACUauGGGUG- -5' |
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7198 | 3' | -55.6 | NC_001900.1 | + | 35617 | 0.74 | 0.268115 |
Target: 5'- gCCACCGaUCAGGCCGGUGAcaacgacgcccuucuUGCCC-Cg -3' miRNA: 3'- -GGUGGCcGGUUUGGCCACU---------------AUGGGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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