miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 24060 1.12 0.000574
Target:  5'- aCCACCGGCCAAACCGGUGAUACCCACu -3'
miRNA:   3'- -GGUGGCCGGUUUGGCCACUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 46001 0.86 0.039477
Target:  5'- cCCGCCGGUCGggUCGGcgGGUGCCCGCu -3'
miRNA:   3'- -GGUGGCCGGUuuGGCCa-CUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 27919 0.78 0.132044
Target:  5'- uCCACCGGCCAggaAGCUGGUGucgGUGCCUc- -3'
miRNA:   3'- -GGUGGCCGGU---UUGGCCAC---UAUGGGug -5'
7198 3' -55.6 NC_001900.1 + 45429 0.78 0.139595
Target:  5'- uCCACCGGCCAuGCCGG-GGUaggGCUCAa -3'
miRNA:   3'- -GGUGGCCGGUuUGGCCaCUA---UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 25008 0.77 0.160231
Target:  5'- aUCACCGGUUuGGCCGGUGGU-CCCGg -3'
miRNA:   3'- -GGUGGCCGGuUUGGCCACUAuGGGUg -5'
7198 3' -55.6 NC_001900.1 + 41083 0.76 0.183579
Target:  5'- -uGCgGGCCAGGCCGGUGAc-CUCGCg -3'
miRNA:   3'- ggUGgCCGGUUUGGCCACUauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 21057 0.75 0.209883
Target:  5'- aCACCGGcCCGAACgGcGUGAUcuucguGCCCGCc -3'
miRNA:   3'- gGUGGCC-GGUUUGgC-CACUA------UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 6006 0.75 0.22718
Target:  5'- -aAUCGGCgCGAGCCGGUGAccUCCGCg -3'
miRNA:   3'- ggUGGCCG-GUUUGGCCACUauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 25467 0.74 0.24567
Target:  5'- gCACCGGCCuGAGCCGccagcGUGGcuCCCACg -3'
miRNA:   3'- gGUGGCCGG-UUUGGC-----CACUauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 48329 0.74 0.26539
Target:  5'- cUCACCGGuCCAAGuuGGUGAUgacAUUCACu -3'
miRNA:   3'- -GGUGGCC-GGUUUggCCACUA---UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 35617 0.74 0.268115
Target:  5'- gCCACCGaUCAGGCCGGUGAcaacgacgcccuucuUGCCC-Cg -3'
miRNA:   3'- -GGUGGCcGGUUUGGCCACU---------------AUGGGuG- -5'
7198 3' -55.6 NC_001900.1 + 40779 0.73 0.301077
Target:  5'- aCCACCaGGCCAuacgggGACCGGUGcaGCUCGu -3'
miRNA:   3'- -GGUGG-CCGGU------UUGGCCACuaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 3928 0.72 0.324211
Target:  5'- -aGCUGGCCGAgacGCCGGU---ACCCGCc -3'
miRNA:   3'- ggUGGCCGGUU---UGGCCAcuaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 19789 0.72 0.33221
Target:  5'- aCCGCCGGCuCAAgacGCCGG-GGUugAUCUACg -3'
miRNA:   3'- -GGUGGCCG-GUU---UGGCCaCUA--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 47335 0.72 0.33221
Target:  5'- cCCACUGGgCAGACCGaugcuguucGcGAUGCCUACg -3'
miRNA:   3'- -GGUGGCCgGUUUGGC---------CaCUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 30716 0.72 0.33221
Target:  5'- cCCACCGGCCccgaaAGGCCGGgGG--UCCACc -3'
miRNA:   3'- -GGUGGCCGG-----UUUGGCCaCUauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 18348 0.72 0.348642
Target:  5'- aCCcCCGGCCuuucgGGGCCGGUGGguucGgCCACu -3'
miRNA:   3'- -GGuGGCCGG-----UUUGGCCACUa---UgGGUG- -5'
7198 3' -55.6 NC_001900.1 + 17466 0.72 0.348642
Target:  5'- -aACCGGCCGAACCGccaGAaGCUCACc -3'
miRNA:   3'- ggUGGCCGGUUUGGCca-CUaUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 43483 0.71 0.383212
Target:  5'- uCgGCCGGCCAGcUCGGUGcgccGCCUGCu -3'
miRNA:   3'- -GgUGGCCGGUUuGGCCACua--UGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 8778 0.71 0.383212
Target:  5'- gCCgACCGGCCAca-CGGUcGAggacaugACCCGCg -3'
miRNA:   3'- -GG-UGGCCGGUuugGCCA-CUa------UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.