miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7199 3' -60.7 NC_001900.1 + 48594 0.72 0.165631
Target:  5'- -cCCAcuAGCGGCCGGUaGCCGcgugcauagGCUGCu -3'
miRNA:   3'- caGGU--UCGCCGGCCAcUGGCa--------CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 48541 0.66 0.402719
Target:  5'- uGUCCGGGUGGCUguaaaGGgcacguagGGCaCGUGUgGCa -3'
miRNA:   3'- -CAGGUUCGCCGG-----CCa-------CUG-GCACGgCG- -5'
7199 3' -60.7 NC_001900.1 + 48537 0.66 0.385956
Target:  5'- uUCCAGGCcGCgaGGuUGGCCGgaacguagguugucgGCCGCa -3'
miRNA:   3'- cAGGUUCGcCGg-CC-ACUGGCa--------------CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 46034 0.68 0.319837
Target:  5'- cUCCAGGCGGaCCcGUcGCCG-GUCGCc -3'
miRNA:   3'- cAGGUUCGCC-GGcCAcUGGCaCGGCG- -5'
7199 3' -60.7 NC_001900.1 + 45783 0.71 0.209585
Target:  5'- -aCCAGcggaagucGCGGCCGGUGACCaG-GCagaGCa -3'
miRNA:   3'- caGGUU--------CGCCGGCCACUGG-CaCGg--CG- -5'
7199 3' -60.7 NC_001900.1 + 42850 0.67 0.367973
Target:  5'- -cCCAGGauGCCGGgGACgagaGUGCCGa -3'
miRNA:   3'- caGGUUCgcCGGCCaCUGg---CACGGCg -5'
7199 3' -60.7 NC_001900.1 + 42733 0.71 0.204244
Target:  5'- -aCCuugacAGCGGCC-GUGGCCGgugcgGCUGCg -3'
miRNA:   3'- caGGu----UCGCCGGcCACUGGCa----CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 42433 0.7 0.238123
Target:  5'- -cCCGAGgGGaUCGGgcugGcCCGUGCCGUg -3'
miRNA:   3'- caGGUUCgCC-GGCCa---CuGGCACGGCG- -5'
7199 3' -60.7 NC_001900.1 + 41072 0.75 0.106353
Target:  5'- cUCCGAGacguugcgggccaGGCCGGUGACCucgcgGCCGUg -3'
miRNA:   3'- cAGGUUCg------------CCGGCCACUGGca---CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 40294 0.69 0.27658
Target:  5'- -aCCGuGUGGCCGGUcGGCaGUgaGCCGCu -3'
miRNA:   3'- caGGUuCGCCGGCCA-CUGgCA--CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 40128 0.66 0.410819
Target:  5'- uUCCuggccAGCaGCCGcGUccagcagGACCGcUGCCGCg -3'
miRNA:   3'- cAGGu----UCGcCGGC-CA-------CUGGC-ACGGCG- -5'
7199 3' -60.7 NC_001900.1 + 39274 0.67 0.375609
Target:  5'- gGUCCGguucggaAGCGGgaccaCCGG-GACCGcGCCGa -3'
miRNA:   3'- -CAGGU-------UCGCC-----GGCCaCUGGCaCGGCg -5'
7199 3' -60.7 NC_001900.1 + 38774 0.68 0.296879
Target:  5'- cUCCAaauacucGGCGGCUGGgcuuCCGUGCagGCu -3'
miRNA:   3'- cAGGU-------UCGCCGGCCacu-GGCACGg-CG- -5'
7199 3' -60.7 NC_001900.1 + 36585 0.67 0.359614
Target:  5'- --aCGGGCuGUCGGUG-CCGUgcaucGCCGCg -3'
miRNA:   3'- cagGUUCGcCGGCCACuGGCA-----CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 34858 0.67 0.351389
Target:  5'- -gCCAgaGGCaccGGCCcagaGGCCGUGCCGCc -3'
miRNA:   3'- caGGU--UCG---CCGGcca-CUGGCACGGCG- -5'
7199 3' -60.7 NC_001900.1 + 34785 0.67 0.367973
Target:  5'- gGUUCGAGCacGGCgGGUGacGCCGUcUCGCu -3'
miRNA:   3'- -CAGGUUCG--CCGgCCAC--UGGCAcGGCG- -5'
7199 3' -60.7 NC_001900.1 + 27448 0.66 0.402719
Target:  5'- cGUUCGAcGCGGaucagcCUGG-GGCCGaGCCGCa -3'
miRNA:   3'- -CAGGUU-CGCC------GGCCaCUGGCaCGGCG- -5'
7199 3' -60.7 NC_001900.1 + 26883 0.67 0.376464
Target:  5'- gGUCgCAA-CGGCCGGa-ACCGUcGCCGUc -3'
miRNA:   3'- -CAG-GUUcGCCGGCCacUGGCA-CGGCG- -5'
7199 3' -60.7 NC_001900.1 + 25679 0.71 0.193914
Target:  5'- -gUgAGGCGGCaCGGUcACCG-GCCGCu -3'
miRNA:   3'- caGgUUCGCCG-GCCAcUGGCaCGGCG- -5'
7199 3' -60.7 NC_001900.1 + 23379 1.09 0.000247
Target:  5'- gGUCCAAGCGGCCGGUGACCGUGCCGCc -3'
miRNA:   3'- -CAGGUUCGCCGGCCACUGGCACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.