miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7201 3' -55.2 NC_001900.1 + 38992 0.66 0.672238
Target:  5'- gAGUGCGuuGGUGaaGUugGcCAGCUCGGc -3'
miRNA:   3'- -UCACGU--UCGCagCAugCaGUCGGGCU- -5'
7201 3' -55.2 NC_001900.1 + 23892 0.66 0.672238
Target:  5'- --gGCAGGCucgccUCGUACc-CGGCCCGAg -3'
miRNA:   3'- ucaCGUUCGc----AGCAUGcaGUCGGGCU- -5'
7201 3' -55.2 NC_001900.1 + 49007 0.66 0.661183
Target:  5'- uGG-GCgAGGCGcUCuaGCGUCGGCCCGu -3'
miRNA:   3'- -UCaCG-UUCGC-AGcaUGCAGUCGGGCu -5'
7201 3' -55.2 NC_001900.1 + 17423 0.66 0.660075
Target:  5'- cGGUG-AAGCGuUCGUcaaaggcagcuugGCuccgGUCGGCCCGAa -3'
miRNA:   3'- -UCACgUUCGC-AGCA-------------UG----CAGUCGGGCU- -5'
7201 3' -55.2 NC_001900.1 + 21923 0.67 0.650099
Target:  5'- -uUGCAGGCGUCGggGCGaUCAcGCauCCGGc -3'
miRNA:   3'- ucACGUUCGCAGCa-UGC-AGU-CG--GGCU- -5'
7201 3' -55.2 NC_001900.1 + 37368 0.67 0.650099
Target:  5'- cGGUGUGAGCGUCGUuCG-CcGCCuUGAc -3'
miRNA:   3'- -UCACGUUCGCAGCAuGCaGuCGG-GCU- -5'
7201 3' -55.2 NC_001900.1 + 28241 0.67 0.627892
Target:  5'- cGUcGguAGCGUCGUGCaGUCgacggaucaGGUCCGGg -3'
miRNA:   3'- uCA-CguUCGCAGCAUG-CAG---------UCGGGCU- -5'
7201 3' -55.2 NC_001900.1 + 39897 0.67 0.627892
Target:  5'- cGUGCAgcagcGGUGUCGUGuCGgcuucaUCAGCgCGAa -3'
miRNA:   3'- uCACGU-----UCGCAGCAU-GC------AGUCGgGCU- -5'
7201 3' -55.2 NC_001900.1 + 40804 0.69 0.491231
Target:  5'- gGGUGUcggccggcgcuucgaGAGCGUCGUACaUCAuGCCUGu -3'
miRNA:   3'- -UCACG---------------UUCGCAGCAUGcAGU-CGGGCu -5'
7201 3' -55.2 NC_001900.1 + 13778 0.7 0.42709
Target:  5'- -cUGUggGCGUCGgGCGUCAagaacGCCCa- -3'
miRNA:   3'- ucACGuuCGCAGCaUGCAGU-----CGGGcu -5'
7201 3' -55.2 NC_001900.1 + 44040 0.72 0.354351
Target:  5'- cGUGCAAGCGgUGUGCGaguacCGGCCCc- -3'
miRNA:   3'- uCACGUUCGCaGCAUGCa----GUCGGGcu -5'
7201 3' -55.2 NC_001900.1 + 22684 1.09 0.000897
Target:  5'- gAGUGCAAGCGUCGUACGUCAGCCCGAu -3'
miRNA:   3'- -UCACGUUCGCAGCAUGCAGUCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.