miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7201 5' -52.6 NC_001900.1 + 22726 1.14 0.000895
Target:  5'- aCUUCGGGCCGAGGAACUACGACAACCg -3'
miRNA:   3'- -GAAGCCCGGCUCCUUGAUGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 322 0.84 0.106261
Target:  5'- ---aGGGCCGGGGAAUUGaucCGGCAACCg -3'
miRNA:   3'- gaagCCCGGCUCCUUGAU---GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 27548 0.78 0.250362
Target:  5'- gUUCGGGCuCGGGucuuguggaucuGGGCUGCGAUGGCCg -3'
miRNA:   3'- gAAGCCCG-GCUC------------CUUGAUGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 23584 0.74 0.410895
Target:  5'- --cCGGGCCGuGGGAgccacgcuggcgGCUcaggccgguGCGACGACCa -3'
miRNA:   3'- gaaGCCCGGC-UCCU------------UGA---------UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 24047 0.73 0.439908
Target:  5'- -cUCGGuGCCGAGGcGGCUAuccCGGCAgggACCg -3'
miRNA:   3'- gaAGCC-CGGCUCC-UUGAU---GCUGU---UGG- -5'
7201 5' -52.6 NC_001900.1 + 14600 0.73 0.470054
Target:  5'- --aCGGcgaGCCGGGGAugUGgGACAGCa -3'
miRNA:   3'- gaaGCC---CGGCUCCUugAUgCUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 1445 0.72 0.52249
Target:  5'- ---aGGGCCGuGGGAGCaguuggaggACGACGACUc -3'
miRNA:   3'- gaagCCCGGC-UCCUUGa--------UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 10786 0.72 0.52249
Target:  5'- --cUGGGCCG-GGAcuuCUACGACucCCa -3'
miRNA:   3'- gaaGCCCGGCuCCUu--GAUGCUGuuGG- -5'
7201 5' -52.6 NC_001900.1 + 23363 0.72 0.533257
Target:  5'- -aUCGGGCaGAGGcuACUACG-CGAUCa -3'
miRNA:   3'- gaAGCCCGgCUCCu-UGAUGCuGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 39456 0.71 0.570404
Target:  5'- --gUGGGCCG-GGAuACUuggcgucccgugugaGCGGCAACCc -3'
miRNA:   3'- gaaGCCCGGCuCCU-UGA---------------UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 9136 0.71 0.588112
Target:  5'- --aCGGGCCGGGuGGugGCcguccgAUGACAGCCc -3'
miRNA:   3'- gaaGCCCGGCUC-CU--UGa-----UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 14259 0.7 0.621547
Target:  5'- --gCGGGUCaagGAGGAGCgagACGGCGucACCc -3'
miRNA:   3'- gaaGCCCGG---CUCCUUGa--UGCUGU--UGG- -5'
7201 5' -52.6 NC_001900.1 + 8053 0.7 0.632725
Target:  5'- -gUgGGGCC-AGGGGCcugACGGCAagGCCa -3'
miRNA:   3'- gaAgCCCGGcUCCUUGa--UGCUGU--UGG- -5'
7201 5' -52.6 NC_001900.1 + 15883 0.7 0.632725
Target:  5'- ---gGaGGCCGAGGAGCUG-GugGACg -3'
miRNA:   3'- gaagC-CCGGCUCCUUGAUgCugUUGg -5'
7201 5' -52.6 NC_001900.1 + 18436 0.69 0.655067
Target:  5'- gUUCacGGCCGAGG-GCUuCGGCAACg -3'
miRNA:   3'- gAAGc-CCGGCUCCuUGAuGCUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 25170 0.69 0.656183
Target:  5'- -cUCGGGCCGGGuacgaggcGAGCcugccgacgaugauCGACAACCc -3'
miRNA:   3'- gaAGCCCGGCUC--------CUUGau------------GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 43179 0.69 0.666211
Target:  5'- --gCGGGUCGccguagGGGGACUGCGucACGACg -3'
miRNA:   3'- gaaGCCCGGC------UCCUUGAUGC--UGUUGg -5'
7201 5' -52.6 NC_001900.1 + 31621 0.69 0.666211
Target:  5'- gUUCGGGCCGAccGGAgccaaGCUGCcuuuGACGaacgcuucACCg -3'
miRNA:   3'- gAAGCCCGGCU--CCU-----UGAUG----CUGU--------UGG- -5'
7201 5' -52.6 NC_001900.1 + 14756 0.69 0.677322
Target:  5'- --aCGGGCucaucgaaugCGAGGAGCUGuacgaGACAGCa -3'
miRNA:   3'- gaaGCCCG----------GCUCCUUGAUg----CUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 17580 0.69 0.699399
Target:  5'- aCUUCGGuGUCGAGcuuGCU-CGGCAACg -3'
miRNA:   3'- -GAAGCC-CGGCUCcu-UGAuGCUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.