miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7201 5' -52.6 NC_001900.1 + 1445 0.72 0.52249
Target:  5'- ---aGGGCCGuGGGAGCaguuggaggACGACGACUc -3'
miRNA:   3'- gaagCCCGGC-UCCUUGa--------UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 16011 0.68 0.721207
Target:  5'- --cCGGGCCGAGcug-UACG-CGACCg -3'
miRNA:   3'- gaaGCCCGGCUCcuugAUGCuGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 15558 0.67 0.77392
Target:  5'- --cCGGGCgGuGGAGcCUGacccaaacuUGACAGCCa -3'
miRNA:   3'- gaaGCCCGgCuCCUU-GAU---------GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 11965 0.66 0.84107
Target:  5'- gCUUCGguGGUCGcAGGAACUGCcgcuCAACg -3'
miRNA:   3'- -GAAGC--CCGGC-UCCUUGAUGcu--GUUGg -5'
7201 5' -52.6 NC_001900.1 + 9136 0.71 0.588112
Target:  5'- --aCGGGCCGGGuGGugGCcguccgAUGACAGCCc -3'
miRNA:   3'- gaaGCCCGGCUC-CU--UGa-----UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 14259 0.7 0.621547
Target:  5'- --gCGGGUCaagGAGGAGCgagACGGCGucACCc -3'
miRNA:   3'- gaaGCCCGG---CUCCUUGa--UGCUGU--UGG- -5'
7201 5' -52.6 NC_001900.1 + 15883 0.7 0.632725
Target:  5'- ---gGaGGCCGAGGAGCUG-GugGACg -3'
miRNA:   3'- gaagC-CCGGCUCCUUGAUgCugUUGg -5'
7201 5' -52.6 NC_001900.1 + 18436 0.69 0.655067
Target:  5'- gUUCacGGCCGAGG-GCUuCGGCAACg -3'
miRNA:   3'- gAAGc-CCGGCUCCuUGAuGCUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 322 0.84 0.106261
Target:  5'- ---aGGGCCGGGGAAUUGaucCGGCAACCg -3'
miRNA:   3'- gaagCCCGGCUCCUUGAU---GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 721 0.68 0.721207
Target:  5'- --aCGGGCCGcagcggucuGGAACgucUACcGCAGCCg -3'
miRNA:   3'- gaaGCCCGGCu--------CCUUG---AUGcUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 14756 0.69 0.677322
Target:  5'- --aCGGGCucaucgaaugCGAGGAGCUGuacgaGACAGCa -3'
miRNA:   3'- gaaGCCCG----------GCUCCUUGAUg----CUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 31621 0.69 0.666211
Target:  5'- gUUCGGGCCGAccGGAgccaaGCUGCcuuuGACGaacgcuucACCg -3'
miRNA:   3'- gAAGCCCGGCU--CCU-----UGAUG----CUGU--------UGG- -5'
7201 5' -52.6 NC_001900.1 + 10786 0.72 0.52249
Target:  5'- --cUGGGCCG-GGAcuuCUACGACucCCa -3'
miRNA:   3'- gaaGCCCGGCuCCUu--GAUGCUGuuGG- -5'
7201 5' -52.6 NC_001900.1 + 17580 0.69 0.699399
Target:  5'- aCUUCGGuGUCGAGcuuGCU-CGGCAACg -3'
miRNA:   3'- -GAAGCC-CGGCUCcu-UGAuGCUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 23363 0.72 0.533257
Target:  5'- -aUCGGGCaGAGGcuACUACG-CGAUCa -3'
miRNA:   3'- gaAGCCCGgCUCCu-UGAUGCuGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 25170 0.69 0.656183
Target:  5'- -cUCGGGCCGGGuacgaggcGAGCcugccgacgaugauCGACAACCc -3'
miRNA:   3'- gaAGCCCGGCUC--------CUUGau------------GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 26093 0.69 0.710342
Target:  5'- ---aGGGCgGGGGucauCU-CGGCGACCg -3'
miRNA:   3'- gaagCCCGgCUCCuu--GAuGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 23330 0.68 0.753205
Target:  5'- --cUGGGCCGAGuucuauACcgGCGGCGGCUa -3'
miRNA:   3'- gaaGCCCGGCUCcu----UGa-UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 39456 0.71 0.570404
Target:  5'- --gUGGGCCG-GGAuACUuggcgucccgugugaGCGGCAACCc -3'
miRNA:   3'- gaaGCCCGGCuCCU-UGA---------------UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 8053 0.7 0.632725
Target:  5'- -gUgGGGCC-AGGGGCcugACGGCAagGCCa -3'
miRNA:   3'- gaAgCCCGGcUCCUUGa--UGCUGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.