miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7204 3' -59.9 NC_001900.1 + 41987 0.66 0.436638
Target:  5'- cUCGCGAUG-GagCGUGAGGaccaucucGGGCa -3'
miRNA:   3'- uAGCGCUACuCggGCACUCCga------CCCG- -5'
7204 3' -59.9 NC_001900.1 + 23315 0.66 0.417796
Target:  5'- --gGCGGUcGGCCCc---GGCUGGGCc -3'
miRNA:   3'- uagCGCUAcUCGGGcacuCCGACCCG- -5'
7204 3' -59.9 NC_001900.1 + 37401 0.66 0.408563
Target:  5'- gGUCGcCGAUGuggacgacCUCGUcGGGCUGGGUg -3'
miRNA:   3'- -UAGC-GCUACuc------GGGCAcUCCGACCCG- -5'
7204 3' -59.9 NC_001900.1 + 39303 0.66 0.399459
Target:  5'- -cCGCGccGAGCCCGUGGGGgUc-GCu -3'
miRNA:   3'- uaGCGCuaCUCGGGCACUCCgAccCG- -5'
7204 3' -59.9 NC_001900.1 + 28037 0.67 0.342727
Target:  5'- --gGUGcgGAGCcgccaccgucacaggCCGUGAGGCccaGGGCg -3'
miRNA:   3'- uagCGCuaCUCG---------------GGCACUCCGa--CCCG- -5'
7204 3' -59.9 NC_001900.1 + 38502 0.68 0.300801
Target:  5'- gGUUGUGGcuuggGAGCUggCGUGGGGUUGGGg -3'
miRNA:   3'- -UAGCGCUa----CUCGG--GCACUCCGACCCg -5'
7204 3' -59.9 NC_001900.1 + 28006 0.69 0.279273
Target:  5'- -aCGUGcgGAGCCCuc-GGGCUGGuGCc -3'
miRNA:   3'- uaGCGCuaCUCGGGcacUCCGACC-CG- -5'
7204 3' -59.9 NC_001900.1 + 19282 0.69 0.272374
Target:  5'- uGUCGCGA-GAcUCCGUGuGGCguaaggcaUGGGCg -3'
miRNA:   3'- -UAGCGCUaCUcGGGCACuCCG--------ACCCG- -5'
7204 3' -59.9 NC_001900.1 + 4184 0.71 0.199983
Target:  5'- cAUCGCugGAUGAGaUCCGaGAGGUcgUGGGCu -3'
miRNA:   3'- -UAGCG--CUACUC-GGGCaCUCCG--ACCCG- -5'
7204 3' -59.9 NC_001900.1 + 4473 0.71 0.193235
Target:  5'- uUgGCGggGAGCaCCcacccaguucccuuGUGGGGCUGGGUc -3'
miRNA:   3'- uAgCGCuaCUCG-GG--------------CACUCCGACCCG- -5'
7204 3' -59.9 NC_001900.1 + 14056 0.73 0.141024
Target:  5'- uUCGUGAUcGAGgacuCCCGcGAgGGCUGGGCa -3'
miRNA:   3'- uAGCGCUA-CUC----GGGCaCU-CCGACCCG- -5'
7204 3' -59.9 NC_001900.1 + 10494 0.75 0.095664
Target:  5'- -cCGCGAUGGGCCuCGgccuGCUGGGCa -3'
miRNA:   3'- uaGCGCUACUCGG-GCacucCGACCCG- -5'
7204 3' -59.9 NC_001900.1 + 21943 0.98 0.001981
Target:  5'- cAUCGCGAUGAG-CCGUGAGGCUGGGCg -3'
miRNA:   3'- -UAGCGCUACUCgGGCACUCCGACCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.