miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7212 3' -61.3 NC_001900.1 + 4068 0.67 0.368613
Target:  5'- cCUCgaucaaGGUCGaGUCCGAAgaGGCCGAc- -3'
miRNA:   3'- -GAGg-----CCAGC-CGGGCUUggCCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 4883 0.67 0.344168
Target:  5'- -aCCGGUaCGGCUCGAcugagagcuuCCGGCuCGAccACa -3'
miRNA:   3'- gaGGCCA-GCCGGGCUu---------GGCCG-GCU--UG- -5'
7212 3' -61.3 NC_001900.1 + 5741 0.72 0.167498
Target:  5'- --aCGGUCGGCCCGAcgugagggaGCCaGCgUGAGCa -3'
miRNA:   3'- gagGCCAGCCGGGCU---------UGGcCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 5955 0.68 0.313426
Target:  5'- gCUCUGGgcUGGCugCUGAACCGGCCaGGCc -3'
miRNA:   3'- -GAGGCCa-GCCG--GGCUUGGCCGGcUUG- -5'
7212 3' -61.3 NC_001900.1 + 6315 0.69 0.245812
Target:  5'- -cCUGGUCGGCgcagCCGcACCGGCCa--- -3'
miRNA:   3'- gaGGCCAGCCG----GGCuUGGCCGGcuug -5'
7212 3' -61.3 NC_001900.1 + 8633 0.67 0.360334
Target:  5'- gCUCUGGUCGGCugCCGggUcuccgaCGGCCu-GCu -3'
miRNA:   3'- -GAGGCCAGCCG--GGCuuG------GCCGGcuUG- -5'
7212 3' -61.3 NC_001900.1 + 9250 0.67 0.352185
Target:  5'- uUCCguacgaGGcCGGCCUGAGCaCGGCCa--- -3'
miRNA:   3'- gAGG------CCaGCCGGGCUUG-GCCGGcuug -5'
7212 3' -61.3 NC_001900.1 + 12718 0.66 0.420954
Target:  5'- --aCGGUgaGGCCgCGAGCCcguuccguucgGGCCGGAUc -3'
miRNA:   3'- gagGCCAg-CCGG-GCUUGG-----------CCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 14381 0.69 0.245812
Target:  5'- -gCCGGUCGGCUCGcAuggcgaugaugcACUGGgCGGACu -3'
miRNA:   3'- gaGGCCAGCCGGGC-U------------UGGCCgGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 15765 0.73 0.146818
Target:  5'- ---aGGUgCGGCCUGcGCCGGCCGAcGCg -3'
miRNA:   3'- gaggCCA-GCCGGGCuUGGCCGGCU-UG- -5'
7212 3' -61.3 NC_001900.1 + 16539 0.68 0.296712
Target:  5'- -gCCGGUCGGUccugaCCGAACUGGagcgucacaggcacCUGAGCu -3'
miRNA:   3'- gaGGCCAGCCG-----GGCUUGGCC--------------GGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 17451 1.08 0.000329
Target:  5'- gCUCCGGUCGGCCCGAACCGGCCGAACc -3'
miRNA:   3'- -GAGGCCAGCCGGGCUUGGCCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 19594 0.69 0.277985
Target:  5'- ---aGGUCGGCCgCGAGCaGGgCGGGCu -3'
miRNA:   3'- gaggCCAGCCGG-GCUUGgCCgGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 19867 0.66 0.403009
Target:  5'- gCUCCGaGUCGGgcucCCCGGugUgGGCgCGGAUg -3'
miRNA:   3'- -GAGGC-CAGCC----GGGCUugG-CCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 23124 0.8 0.043724
Target:  5'- uUCUGGUCGGCCCuGACCGGgcgcagcCCGGGCg -3'
miRNA:   3'- gAGGCCAGCCGGGcUUGGCC-------GGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 23316 0.73 0.128492
Target:  5'- --gCGGUCGGCCCcGGCUGGgCCGAGu -3'
miRNA:   3'- gagGCCAGCCGGGcUUGGCC-GGCUUg -5'
7212 3' -61.3 NC_001900.1 + 23322 0.68 0.306073
Target:  5'- -gCCGGggcgCGGCCCGcgUCGGCgaGAAg -3'
miRNA:   3'- gaGGCCa---GCCGGGCuuGGCCGg-CUUg -5'
7212 3' -61.3 NC_001900.1 + 23816 0.7 0.22803
Target:  5'- gCUCCGGUCGGCUauCGGcGCUGGCUuccGGCg -3'
miRNA:   3'- -GAGGCCAGCCGG--GCU-UGGCCGGc--UUG- -5'
7212 3' -61.3 NC_001900.1 + 25738 0.67 0.368613
Target:  5'- -gCCGGuauagaacUCGGCCC-AGCCggGGCCGAc- -3'
miRNA:   3'- gaGGCC--------AGCCGGGcUUGG--CCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 25922 0.68 0.298852
Target:  5'- gUCUGGUCcucGCCCGGGCUgcgcccgucagGGCCGAc- -3'
miRNA:   3'- gAGGCCAGc--CGGGCUUGG-----------CCGGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.