miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7212 3' -61.3 NC_001900.1 + 23124 0.8 0.043724
Target:  5'- uUCUGGUCGGCCCuGACCGGgcgcagcCCGGGCg -3'
miRNA:   3'- gAGGCCAGCCGGGcUUGGCC-------GGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 35727 0.66 0.411921
Target:  5'- uCUUCacGUCGGCCUccGCUGGCCGuAGCc -3'
miRNA:   3'- -GAGGc-CAGCCGGGcuUGGCCGGC-UUG- -5'
7212 3' -61.3 NC_001900.1 + 12718 0.66 0.420954
Target:  5'- --aCGGUgaGGCCgCGAGCCcguuccguucgGGCCGGAUc -3'
miRNA:   3'- gagGCCAg-CCGG-GCUUGG-----------CCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 26333 0.66 0.423686
Target:  5'- aUCCGGuugucguaguuccUCGGCCCGAaguACCgcugcccgucgaucgGGCUGAcguACg -3'
miRNA:   3'- gAGGCC-------------AGCCGGGCU---UGG---------------CCGGCU---UG- -5'
7212 3' -61.3 NC_001900.1 + 27476 0.71 0.20082
Target:  5'- -gCCGcaCGGCCuUGAGCCGGCCGucGGCg -3'
miRNA:   3'- gaGGCcaGCCGG-GCUUGGCCGGC--UUG- -5'
7212 3' -61.3 NC_001900.1 + 23816 0.7 0.22803
Target:  5'- gCUCCGGUCGGCUauCGGcGCUGGCUuccGGCg -3'
miRNA:   3'- -GAGGCCAGCCGG--GCU-UGGCCGGc--UUG- -5'
7212 3' -61.3 NC_001900.1 + 19594 0.69 0.277985
Target:  5'- ---aGGUCGGCCgCGAGCaGGgCGGGCu -3'
miRNA:   3'- gaggCCAGCCGG-GCUUGgCCgGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 31612 0.68 0.306073
Target:  5'- gUUCGGcCGGUUCGGGCCGaCCGGAg -3'
miRNA:   3'- gAGGCCaGCCGGGCUUGGCcGGCUUg -5'
7212 3' -61.3 NC_001900.1 + 8633 0.67 0.360334
Target:  5'- gCUCUGGUCGGCugCCGggUcuccgaCGGCCu-GCu -3'
miRNA:   3'- -GAGGCCAGCCG--GGCuuG------GCCGGcuUG- -5'
7212 3' -61.3 NC_001900.1 + 32530 0.66 0.403009
Target:  5'- gUUCGGUCaGGaCCG-ACCGGCUGGc- -3'
miRNA:   3'- gAGGCCAG-CCgGGCuUGGCCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 45016 0.66 0.377021
Target:  5'- -cCUGGUCGGCCUucaGAAUCuccucggcgacaGGCCGAuACa -3'
miRNA:   3'- gaGGCCAGCCGGG---CUUGG------------CCGGCU-UG- -5'
7212 3' -61.3 NC_001900.1 + 4883 0.67 0.344168
Target:  5'- -aCCGGUaCGGCUCGAcugagagcuuCCGGCuCGAccACa -3'
miRNA:   3'- gaGGCCA-GCCGGGCUu---------GGCCG-GCU--UG- -5'
7212 3' -61.3 NC_001900.1 + 29899 0.77 0.074486
Target:  5'- gUCCGGUC-GCCCGAgaGCgCGGCCaGGACg -3'
miRNA:   3'- gAGGCCAGcCGGGCU--UG-GCCGG-CUUG- -5'
7212 3' -61.3 NC_001900.1 + 37182 0.66 0.385557
Target:  5'- -aCUGGUCGGCguacucgaCCaGAGCUGGUgCGAACu -3'
miRNA:   3'- gaGGCCAGCCG--------GG-CUUGGCCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 23316 0.73 0.128492
Target:  5'- --gCGGUCGGCCCcGGCUGGgCCGAGu -3'
miRNA:   3'- gagGCCAGCCGGGcUUGGCC-GGCUUg -5'
7212 3' -61.3 NC_001900.1 + 40302 0.68 0.320912
Target:  5'- -gCCGGUCGGCagUGAGCCgcugcGGCCGu-- -3'
miRNA:   3'- gaGGCCAGCCGg-GCUUGG-----CCGGCuug -5'
7212 3' -61.3 NC_001900.1 + 19867 0.66 0.403009
Target:  5'- gCUCCGaGUCGGgcucCCCGGugUgGGCgCGGAUg -3'
miRNA:   3'- -GAGGC-CAGCC----GGGCUugG-CCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 34299 0.66 0.411921
Target:  5'- --aCGGUgGGCUCGGAUCaGGUCGAu- -3'
miRNA:   3'- gagGCCAgCCGGGCUUGG-CCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 29749 0.71 0.19075
Target:  5'- -aCCGuGUUGGCCCcaccgccguaGAcCCGGCCGAAg -3'
miRNA:   3'- gaGGC-CAGCCGGG----------CUuGGCCGGCUUg -5'
7212 3' -61.3 NC_001900.1 + 6315 0.69 0.245812
Target:  5'- -cCUGGUCGGCgcagCCGcACCGGCCa--- -3'
miRNA:   3'- gaGGCCAGCCG----GGCuUGGCCGGcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.