miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7214 3' -52 NC_001900.1 + 16801 1.09 0.002104
Target:  5'- gCCGAACAUGACCAACUCGCCGAUGGUc -3'
miRNA:   3'- -GGCUUGUACUGGUUGAGCGGCUACCA- -5'
7214 3' -52 NC_001900.1 + 2931 0.77 0.293915
Target:  5'- cCUGGuCAUcGACCAGCUCGgCGAUGGa -3'
miRNA:   3'- -GGCUuGUA-CUGGUUGAGCgGCUACCa -5'
7214 3' -52 NC_001900.1 + 20878 0.76 0.341715
Target:  5'- aUCGcACAaGGCCAGCUCGCCGA-GGc -3'
miRNA:   3'- -GGCuUGUaCUGGUUGAGCGGCUaCCa -5'
7214 3' -52 NC_001900.1 + 1786 0.72 0.537364
Target:  5'- aCCGggUcacuGUGACCAucggcgACUCGCUGAUGu- -3'
miRNA:   3'- -GGCuuG----UACUGGU------UGAGCGGCUACca -5'
7214 3' -52 NC_001900.1 + 45143 0.72 0.537364
Target:  5'- aCCG-GCGUcucGGCCAGCUCGCCGAc--- -3'
miRNA:   3'- -GGCuUGUA---CUGGUUGAGCGGCUacca -5'
7214 3' -52 NC_001900.1 + 8018 0.71 0.570393
Target:  5'- -aGAACGUcGACCGACUgGCCaagaGGUGGa -3'
miRNA:   3'- ggCUUGUA-CUGGUUGAgCGG----CUACCa -5'
7214 3' -52 NC_001900.1 + 19473 0.71 0.603893
Target:  5'- cCCGAug--GGCCGGCggcUGCCGGUGGa -3'
miRNA:   3'- -GGCUuguaCUGGUUGa--GCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 10489 0.7 0.648866
Target:  5'- gCCGAaguACAUGACCA---UGCCGggGGa -3'
miRNA:   3'- -GGCU---UGUACUGGUugaGCGGCuaCCa -5'
7214 3' -52 NC_001900.1 + 14588 0.7 0.648866
Target:  5'- uCCGAGaa-GACCcucGACUCGCCGG-GGUc -3'
miRNA:   3'- -GGCUUguaCUGG---UUGAGCGGCUaCCA- -5'
7214 3' -52 NC_001900.1 + 8693 0.7 0.671298
Target:  5'- aCGAGgAgaugcUGAcCCGGCUCGCCGAgcacgGGUu -3'
miRNA:   3'- gGCUUgU-----ACU-GGUUGAGCGGCUa----CCA- -5'
7214 3' -52 NC_001900.1 + 6292 0.7 0.671298
Target:  5'- gCUGGACGccUGGCaCGACcuggUGCCGAUGGa -3'
miRNA:   3'- -GGCUUGU--ACUG-GUUGa---GCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 12165 0.7 0.682462
Target:  5'- cCCGAGCAggcgaagGACUAcUUCGCCGA-GGc -3'
miRNA:   3'- -GGCUUGUa------CUGGUuGAGCGGCUaCCa -5'
7214 3' -52 NC_001900.1 + 6906 0.69 0.690247
Target:  5'- aCGGGgAUGACCcguucagcggccugGAgUCGCUGAUGGa -3'
miRNA:   3'- gGCUUgUACUGG--------------UUgAGCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 32982 0.69 0.693575
Target:  5'- gCCGAACuugucGAUCAGCUCGgCGA-GGg -3'
miRNA:   3'- -GGCUUGua---CUGGUUGAGCgGCUaCCa -5'
7214 3' -52 NC_001900.1 + 41441 0.69 0.693575
Target:  5'- aCCaGGCGU-ACCuGCUCGUCGGUGGg -3'
miRNA:   3'- -GGcUUGUAcUGGuUGAGCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 36442 0.68 0.747973
Target:  5'- gCCucACcgGGCCGcaGCUCGCCGAgcuucuucUGGa -3'
miRNA:   3'- -GGcuUGuaCUGGU--UGAGCGGCU--------ACCa -5'
7214 3' -52 NC_001900.1 + 11327 0.68 0.768958
Target:  5'- aCCG-ACAUGGCCggUUaCGCCGGUu-- -3'
miRNA:   3'- -GGCuUGUACUGGuuGA-GCGGCUAcca -5'
7214 3' -52 NC_001900.1 + 47264 0.68 0.779235
Target:  5'- cUCG-ACAUcAgCGAgUCGCCGAUGGUc -3'
miRNA:   3'- -GGCuUGUAcUgGUUgAGCGGCUACCA- -5'
7214 3' -52 NC_001900.1 + 3925 0.68 0.789353
Target:  5'- gCGAGC-UGGCCGAgaCGCCGGUa-- -3'
miRNA:   3'- gGCUUGuACUGGUUgaGCGGCUAcca -5'
7214 3' -52 NC_001900.1 + 39002 0.67 0.798314
Target:  5'- gUGAAguUGGCCAGCUCggcuGCCGAgaacugcUGGa -3'
miRNA:   3'- gGCUUguACUGGUUGAG----CGGCU-------ACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.