miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7214 3' -52 NC_001900.1 + 1786 0.72 0.537364
Target:  5'- aCCGggUcacuGUGACCAucggcgACUCGCUGAUGu- -3'
miRNA:   3'- -GGCuuG----UACUGGU------UGAGCGGCUACca -5'
7214 3' -52 NC_001900.1 + 2931 0.77 0.293915
Target:  5'- cCUGGuCAUcGACCAGCUCGgCGAUGGa -3'
miRNA:   3'- -GGCUuGUA-CUGGUUGAGCgGCUACCa -5'
7214 3' -52 NC_001900.1 + 3925 0.68 0.789353
Target:  5'- gCGAGC-UGGCCGAgaCGCCGGUa-- -3'
miRNA:   3'- gGCUUGuACUGGUUgaGCGGCUAcca -5'
7214 3' -52 NC_001900.1 + 6292 0.7 0.671298
Target:  5'- gCUGGACGccUGGCaCGACcuggUGCCGAUGGa -3'
miRNA:   3'- -GGCUUGU--ACUG-GUUGa---GCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 6906 0.69 0.690247
Target:  5'- aCGGGgAUGACCcguucagcggccugGAgUCGCUGAUGGa -3'
miRNA:   3'- gGCUUgUACUGG--------------UUgAGCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 8018 0.71 0.570393
Target:  5'- -aGAACGUcGACCGACUgGCCaagaGGUGGa -3'
miRNA:   3'- ggCUUGUA-CUGGUUGAgCGG----CUACCa -5'
7214 3' -52 NC_001900.1 + 8693 0.7 0.671298
Target:  5'- aCGAGgAgaugcUGAcCCGGCUCGCCGAgcacgGGUu -3'
miRNA:   3'- gGCUUgU-----ACU-GGUUGAGCGGCUa----CCA- -5'
7214 3' -52 NC_001900.1 + 10489 0.7 0.648866
Target:  5'- gCCGAaguACAUGACCA---UGCCGggGGa -3'
miRNA:   3'- -GGCU---UGUACUGGUugaGCGGCuaCCa -5'
7214 3' -52 NC_001900.1 + 11327 0.68 0.768958
Target:  5'- aCCG-ACAUGGCCggUUaCGCCGGUu-- -3'
miRNA:   3'- -GGCuUGUACUGGuuGA-GCGGCUAcca -5'
7214 3' -52 NC_001900.1 + 12165 0.7 0.682462
Target:  5'- cCCGAGCAggcgaagGACUAcUUCGCCGA-GGc -3'
miRNA:   3'- -GGCUUGUa------CUGGUuGAGCGGCUaCCa -5'
7214 3' -52 NC_001900.1 + 14588 0.7 0.648866
Target:  5'- uCCGAGaa-GACCcucGACUCGCCGG-GGUc -3'
miRNA:   3'- -GGCUUguaCUGG---UUGAGCGGCUaCCA- -5'
7214 3' -52 NC_001900.1 + 15942 0.66 0.878564
Target:  5'- aCCGggUgaccaagAUGGCCGaucACUCGCCaaccugGGUGGc -3'
miRNA:   3'- -GGCuuG-------UACUGGU---UGAGCGG------CUACCa -5'
7214 3' -52 NC_001900.1 + 16801 1.09 0.002104
Target:  5'- gCCGAACAUGACCAACUCGCCGAUGGUc -3'
miRNA:   3'- -GGCUUGUACUGGUUGAGCGGCUACCA- -5'
7214 3' -52 NC_001900.1 + 19473 0.71 0.603893
Target:  5'- cCCGAug--GGCCGGCggcUGCCGGUGGa -3'
miRNA:   3'- -GGCUuguaCUGGUUGa--GCGGCUACCa -5'
7214 3' -52 NC_001900.1 + 20878 0.76 0.341715
Target:  5'- aUCGcACAaGGCCAGCUCGCCGA-GGc -3'
miRNA:   3'- -GGCuUGUaCUGGUUGAGCGGCUaCCa -5'
7214 3' -52 NC_001900.1 + 21064 0.67 0.818635
Target:  5'- cCCGAacgGCGUGAUCuucguGCcCGCCGggGGc -3'
miRNA:   3'- -GGCU---UGUACUGGu----UGaGCGGCuaCCa -5'
7214 3' -52 NC_001900.1 + 24411 0.67 0.809065
Target:  5'- cCUGAGCGUGGCCGucacccaggaAC-CGCCGAagccgccuUGGc -3'
miRNA:   3'- -GGCUUGUACUGGU----------UGaGCGGCU--------ACCa -5'
7214 3' -52 NC_001900.1 + 24810 0.66 0.871409
Target:  5'- cUCGGGCgGUGGCacGCUCaucgcuGCCGGUGGUg -3'
miRNA:   3'- -GGCUUG-UACUGguUGAG------CGGCUACCA- -5'
7214 3' -52 NC_001900.1 + 25754 0.66 0.879345
Target:  5'- gCCcAGCcggGGCCGAC-CGCCG-UGGUg -3'
miRNA:   3'- -GGcUUGua-CUGGUUGaGCGGCuACCA- -5'
7214 3' -52 NC_001900.1 + 32982 0.69 0.693575
Target:  5'- gCCGAACuugucGAUCAGCUCGgCGA-GGg -3'
miRNA:   3'- -GGCUUGua---CUGGUUGAGCgGCUaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.