miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7215 5' -57.9 NC_001900.1 + 6113 0.66 0.529072
Target:  5'- cUgGCCCAGaucGAGGCagccaacccCGAGUACCUa -3'
miRNA:   3'- aAgCGGGUC---CUCCGcau------GCUCAUGGA- -5'
7215 5' -57.9 NC_001900.1 + 44039 0.66 0.507989
Target:  5'- -gCGUgCAaGcGGUGUGCGAGUACCg -3'
miRNA:   3'- aaGCGgGUcCuCCGCAUGCUCAUGGa -5'
7215 5' -57.9 NC_001900.1 + 27649 0.66 0.507989
Target:  5'- gUCGCCCAGGccGGUG-ACGAuGU-CCUc -3'
miRNA:   3'- aAGCGGGUCCu-CCGCaUGCU-CAuGGA- -5'
7215 5' -57.9 NC_001900.1 + 17511 0.66 0.497582
Target:  5'- ---aUCCGGGAGGCGUACcgGGGUGgCa -3'
miRNA:   3'- aagcGGGUCCUCCGCAUG--CUCAUgGa -5'
7215 5' -57.9 NC_001900.1 + 14131 0.66 0.487271
Target:  5'- gUCGCCCacaAGGAGcGCGUcuACGAcGUGuCCc -3'
miRNA:   3'- aAGCGGG---UCCUC-CGCA--UGCU-CAU-GGa -5'
7215 5' -57.9 NC_001900.1 + 8186 0.67 0.45697
Target:  5'- gUCGCCgAGaAGGCGUAcguCGAGUGgCa -3'
miRNA:   3'- aAGCGGgUCcUCCGCAU---GCUCAUgGa -5'
7215 5' -57.9 NC_001900.1 + 13101 0.68 0.39048
Target:  5'- gUCGagcacCCCGGGcuGCGcgACGAGUACCUc -3'
miRNA:   3'- aAGC-----GGGUCCucCGCa-UGCUCAUGGA- -5'
7215 5' -57.9 NC_001900.1 + 12568 0.68 0.381508
Target:  5'- aUCGUCCAGGAGcUGUGgGucuGGUACCUc -3'
miRNA:   3'- aAGCGGGUCCUCcGCAUgC---UCAUGGA- -5'
7215 5' -57.9 NC_001900.1 + 23186 0.69 0.338757
Target:  5'- gUgGCCgGGGAGGUGUuCGAGcacUACCg -3'
miRNA:   3'- aAgCGGgUCCUCCGCAuGCUC---AUGGa -5'
7215 5' -57.9 NC_001900.1 + 45124 0.71 0.264024
Target:  5'- gUUCGCCguGGAGGCG----GGUACCg -3'
miRNA:   3'- -AAGCGGguCCUCCGCaugcUCAUGGa -5'
7215 5' -57.9 NC_001900.1 + 12221 0.75 0.13875
Target:  5'- gUUCGCCCAGaAGGUGccgAUGGGUACCa -3'
miRNA:   3'- -AAGCGGGUCcUCCGCa--UGCUCAUGGa -5'
7215 5' -57.9 NC_001900.1 + 16708 1.05 0.00089
Target:  5'- gUUCGCCCAGGAGGCGUACGAGUACCUc -3'
miRNA:   3'- -AAGCGGGUCCUCCGCAUGCUCAUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.