miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7224 5' -56 NC_001900.1 + 11668 0.66 0.671595
Target:  5'- --aGGUCGuccaCAUCGGCGACcugauggacuACCCg -3'
miRNA:   3'- acaCCAGCccaaGUAGCCGCUG----------UGGG- -5'
7224 5' -56 NC_001900.1 + 46006 0.66 0.671595
Target:  5'- --cGGUCGGG----UCGGCGgguGCCCg -3'
miRNA:   3'- acaCCAGCCCaaguAGCCGCug-UGGG- -5'
7224 5' -56 NC_001900.1 + 35230 0.67 0.617037
Target:  5'- aGUGGUCcgaGGGcUUC-UCGGUc-CACCCg -3'
miRNA:   3'- aCACCAG---CCC-AAGuAGCCGcuGUGGG- -5'
7224 5' -56 NC_001900.1 + 16987 0.67 0.606126
Target:  5'- gUGUGGUCGcacucggcauGGacggCAUCaaGGCGGCAgCCg -3'
miRNA:   3'- -ACACCAGC----------CCaa--GUAG--CCGCUGUgGG- -5'
7224 5' -56 NC_001900.1 + 4936 0.67 0.595237
Target:  5'- ----cUCGGGUUCA--GGCGACuCCCu -3'
miRNA:   3'- acaccAGCCCAAGUagCCGCUGuGGG- -5'
7224 5' -56 NC_001900.1 + 24951 0.67 0.584379
Target:  5'- aGUGGuaUCGGGUacgCAccugguggCGGCGGCGCagCCg -3'
miRNA:   3'- aCACC--AGCCCAa--GUa-------GCCGCUGUG--GG- -5'
7224 5' -56 NC_001900.1 + 32446 0.68 0.57356
Target:  5'- --aGGUCGGcGUUgaccggaaCGUCGGCcGACAgcuCCCg -3'
miRNA:   3'- acaCCAGCC-CAA--------GUAGCCG-CUGU---GGG- -5'
7224 5' -56 NC_001900.1 + 12005 0.68 0.562789
Target:  5'- cGUGGcggcgucCGGGUgacgcagaaGUCGGCuGACACCg -3'
miRNA:   3'- aCACCa------GCCCAag-------UAGCCG-CUGUGGg -5'
7224 5' -56 NC_001900.1 + 46623 0.68 0.556352
Target:  5'- cGUGGUa-GGUccaguccgcgaugucUCGUCGGCcGAC-CCCg -3'
miRNA:   3'- aCACCAgcCCA---------------AGUAGCCG-CUGuGGG- -5'
7224 5' -56 NC_001900.1 + 39913 0.68 0.520326
Target:  5'- --gGGgagCGGGcugUCAUCGGaCGGCcaccACCCg -3'
miRNA:   3'- acaCCa--GCCCa--AGUAGCC-GCUG----UGGG- -5'
7224 5' -56 NC_001900.1 + 8886 0.68 0.520326
Target:  5'- gGUGGUCGaaaUCG-CGGCGcguCACCCg -3'
miRNA:   3'- aCACCAGCccaAGUaGCCGCu--GUGGG- -5'
7224 5' -56 NC_001900.1 + 26093 0.69 0.499563
Target:  5'- --aGGgCGGGggUCAucUCGGCGACcggggugucGCCCa -3'
miRNA:   3'- acaCCaGCCCa-AGU--AGCCGCUG---------UGGG- -5'
7224 5' -56 NC_001900.1 + 46592 0.69 0.479176
Target:  5'- uUGUGGUCua---CGUCGGUGGCAgCCCg -3'
miRNA:   3'- -ACACCAGcccaaGUAGCCGCUGU-GGG- -5'
7224 5' -56 NC_001900.1 + 12072 0.69 0.469136
Target:  5'- ---cGUCGGuGaUCAUCGGUcACACCCa -3'
miRNA:   3'- acacCAGCC-CaAGUAGCCGcUGUGGG- -5'
7224 5' -56 NC_001900.1 + 3781 0.7 0.459205
Target:  5'- --aGGUCGGcGUcgUCAccuucgcggUCGGCGugACCUc -3'
miRNA:   3'- acaCCAGCC-CA--AGU---------AGCCGCugUGGG- -5'
7224 5' -56 NC_001900.1 + 41261 0.7 0.449387
Target:  5'- aGUGGUCaucuGGGUguUCcuuUCGGUGGCugUCa -3'
miRNA:   3'- aCACCAG----CCCA--AGu--AGCCGCUGugGG- -5'
7224 5' -56 NC_001900.1 + 19383 0.7 0.411319
Target:  5'- cGUGGaCGGGUUCGacaaGGCGuauCCCg -3'
miRNA:   3'- aCACCaGCCCAAGUag--CCGCuguGGG- -5'
7224 5' -56 NC_001900.1 + 20673 0.72 0.333401
Target:  5'- gGUGGUCGaGUUCGaCGGUGacgaGCACCUg -3'
miRNA:   3'- aCACCAGCcCAAGUaGCCGC----UGUGGG- -5'
7224 5' -56 NC_001900.1 + 31507 0.72 0.317623
Target:  5'- gGUGG-CgGGGUUCAcgccguaguugUCGGCGAgAUCCu -3'
miRNA:   3'- aCACCaG-CCCAAGU-----------AGCCGCUgUGGG- -5'
7224 5' -56 NC_001900.1 + 12802 0.72 0.317623
Target:  5'- --cGGUCGGcUUCAUgGGUGACuucuCCCa -3'
miRNA:   3'- acaCCAGCCcAAGUAgCCGCUGu---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.