miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7231 5' -62 NC_001900.1 + 33381 0.67 0.29479
Target:  5'- uGCUGCGCuucuuCAGCAGGaGCggugucgaccGGCGCGc -3'
miRNA:   3'- gCGACGUG-----GUCGUCCaCGac--------CCGCGC- -5'
7231 5' -62 NC_001900.1 + 16957 0.67 0.29479
Target:  5'- uCGCUGCugUAGCGuucGGcGCUGGaGC-CGg -3'
miRNA:   3'- -GCGACGugGUCGU---CCaCGACC-CGcGC- -5'
7231 5' -62 NC_001900.1 + 35891 0.67 0.259881
Target:  5'- aCGCUuccaacCGCCAGCcgcgaucAGGcGCUGGGCGUc -3'
miRNA:   3'- -GCGAc-----GUGGUCG-------UCCaCGACCCGCGc -5'
7231 5' -62 NC_001900.1 + 42557 0.7 0.172369
Target:  5'- gGCUG-GCCAGCGGGccgaGCUGGGggacCGCGc -3'
miRNA:   3'- gCGACgUGGUCGUCCa---CGACCC----GCGC- -5'
7231 5' -62 NC_001900.1 + 35256 0.74 0.089614
Target:  5'- cCGCU-CAcCCAGCAguugaacaGGUGCUGGGCGUu -3'
miRNA:   3'- -GCGAcGU-GGUCGU--------CCACGACCCGCGc -5'
7231 5' -62 NC_001900.1 + 15342 0.75 0.07306
Target:  5'- aCGCUGCACCAGCuccuggcguuccAGGcgcucuaccagacgUGCUGGGC-CGa -3'
miRNA:   3'- -GCGACGUGGUCG------------UCC--------------ACGACCCGcGC- -5'
7231 5' -62 NC_001900.1 + 7856 1.07 0.000216
Target:  5'- cCGCUGCACCAGCAGGUGCUGGGCGCGc -3'
miRNA:   3'- -GCGACGUGGUCGUCCACGACCCGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.