miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 24970 0.69 0.609007
Target:  5'- cUggUGGCGGCGGCGcAGCcgcaacGGUCCCa- -3'
miRNA:   3'- -GuuGCUGCCGCUGUuUCG------CUAGGGcg -5'
7234 5' -53.4 NC_001900.1 + 14375 0.71 0.532198
Target:  5'- --uCGACGGCGAUguGGacuuccacaCGGUCCUGCa -3'
miRNA:   3'- guuGCUGCCGCUGuuUC---------GCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 13722 0.66 0.811626
Target:  5'- -cGCGAUGuGCGACcacGAAGCGgAUCCUcCg -3'
miRNA:   3'- guUGCUGC-CGCUG---UUUCGC-UAGGGcG- -5'
7234 5' -53.4 NC_001900.1 + 5148 0.67 0.772114
Target:  5'- -uACGACGGCGcACGcgccugGAaCGA-CCCGCu -3'
miRNA:   3'- guUGCUGCCGC-UGU------UUcGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 20146 0.68 0.684551
Target:  5'- -cGCGACGGCGACuuccgucugcGCGGcCUCGUc -3'
miRNA:   3'- guUGCUGCCGCUGuuu-------CGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 1341 0.71 0.510842
Target:  5'- aAGCGuGCGGCGuuCAAcgcgcuGGCGGUCgCCGCc -3'
miRNA:   3'- gUUGC-UGCCGCu-GUU------UCGCUAG-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 41775 0.67 0.761838
Target:  5'- --cCGGCGGCGA--GGGCGAUggCUGCg -3'
miRNA:   3'- guuGCUGCCGCUguUUCGCUAg-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 5006 0.71 0.510842
Target:  5'- cCAGC-ACGGCGGCGGGGgcCGGUaCUCGCa -3'
miRNA:   3'- -GUUGcUGCCGCUGUUUC--GCUA-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 19087 0.71 0.510842
Target:  5'- uGACGAcCGGUGAcCAGGGCGuguUCCUGg -3'
miRNA:   3'- gUUGCU-GCCGCU-GUUUCGCu--AGGGCg -5'
7234 5' -53.4 NC_001900.1 + 6012 0.68 0.686754
Target:  5'- -cGCGAgcCGGUGACcuccgcgagcuGGAGCGAguugUCCGCg -3'
miRNA:   3'- guUGCU--GCCGCUG-----------UUUCGCUa---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 23923 0.66 0.782243
Target:  5'- uCAACGACaaCGACcccAGCGGUCUCGg -3'
miRNA:   3'- -GUUGCUGccGCUGuu-UCGCUAGGGCg -5'
7234 5' -53.4 NC_001900.1 + 3027 0.7 0.580199
Target:  5'- aGGCGAcCGGCGACgGguccgccuggagaucGAGCGGgcaCCCGCc -3'
miRNA:   3'- gUUGCU-GCCGCUG-U---------------UUCGCUa--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 24000 0.7 0.542997
Target:  5'- cCAACGGCGGC-ACAGgugcuaccAGCGcggccgaagCCCGCg -3'
miRNA:   3'- -GUUGCUGCCGcUGUU--------UCGCua-------GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 1243 0.67 0.751425
Target:  5'- uCggUGGCGGCGGC--AGCGGagCUgGCg -3'
miRNA:   3'- -GuuGCUGCCGCUGuuUCGCUa-GGgCG- -5'
7234 5' -53.4 NC_001900.1 + 12611 0.67 0.772114
Target:  5'- gAACGACGGCaa-GAAGUGGaCCCa- -3'
miRNA:   3'- gUUGCUGCCGcugUUUCGCUaGGGcg -5'
7234 5' -53.4 NC_001900.1 + 23290 0.68 0.667969
Target:  5'- gGAUGACGGCGagacgaugaagcuccGCGugcgccgGGGCGcggCCCGCg -3'
miRNA:   3'- gUUGCUGCCGC---------------UGU-------UUCGCua-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 42784 0.68 0.680139
Target:  5'- cCAGCGACGaugucgccgauguucGCGGCugcgcccgcGuCGAUCCCGCc -3'
miRNA:   3'- -GUUGCUGC---------------CGCUGuuu------C-GCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 32176 0.79 0.191836
Target:  5'- gCGGCGAUGGCGACGAucccgacGcCGAUCCaCGCu -3'
miRNA:   3'- -GUUGCUGCCGCUGUUu------C-GCUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 41232 0.74 0.373751
Target:  5'- uGACGGCcGCGAC--GGUGAUCCaCGCu -3'
miRNA:   3'- gUUGCUGcCGCUGuuUCGCUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 16073 0.77 0.250469
Target:  5'- --cUGGCGGCGA-AGAGCGGUUCUGCa -3'
miRNA:   3'- guuGCUGCCGCUgUUUCGCUAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.