miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 27140 0.79 0.186686
Target:  5'- -cGCGAUGGUGAuCGcGGCGAUUCCGCc -3'
miRNA:   3'- guUGCUGCCGCU-GUuUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 37256 0.68 0.664643
Target:  5'- uCGugGACGcCGACAGGGCcGUcguacacggCCCGCa -3'
miRNA:   3'- -GUugCUGCcGCUGUUUCGcUA---------GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 20146 0.68 0.684551
Target:  5'- -cGCGACGGCGACuuccgucugcGCGGcCUCGUc -3'
miRNA:   3'- guUGCUGCCGCUGuuu-------CGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 13722 0.66 0.811626
Target:  5'- -cGCGAUGuGCGACcacGAAGCGgAUCCUcCg -3'
miRNA:   3'- guUGCUGC-CGCUG---UUUCGC-UAGGGcG- -5'
7234 5' -53.4 NC_001900.1 + 8697 0.73 0.391783
Target:  5'- ---aGuACGGCGGCGAAGUGc-CCCGCg -3'
miRNA:   3'- guugC-UGCCGCUGUUUCGCuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 13017 0.72 0.439259
Target:  5'- uCAGCGGCGGCGGCGAGGgcUGAgCCUa- -3'
miRNA:   3'- -GUUGCUGCCGCUGUUUC--GCUaGGGcg -5'
7234 5' -53.4 NC_001900.1 + 18761 0.71 0.489851
Target:  5'- -uACGuCGGCG-CAGcgGGCGAUgaCCCGCu -3'
miRNA:   3'- guUGCuGCCGCuGUU--UCGCUA--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 9760 0.71 0.500298
Target:  5'- uUAGCGAcccccacgggcuCGGCG-CGGucccGGUGGUCCCGCu -3'
miRNA:   3'- -GUUGCU------------GCCGCuGUU----UCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 1341 0.71 0.510842
Target:  5'- aAGCGuGCGGCGuuCAAcgcgcuGGCGGUCgCCGCc -3'
miRNA:   3'- gUUGC-UGCCGCu-GUU------UCGCUAG-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 24970 0.69 0.609007
Target:  5'- cUggUGGCGGCGGCGcAGCcgcaacGGUCCCa- -3'
miRNA:   3'- -GuuGCUGCCGCUGUuUCG------CUAGGGcg -5'
7234 5' -53.4 NC_001900.1 + 24000 0.7 0.542997
Target:  5'- cCAACGGCGGC-ACAGgugcuaccAGCGcggccgaagCCCGCg -3'
miRNA:   3'- -GUUGCUGCCGcUGUU--------UCGCua-------GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 5006 0.71 0.510842
Target:  5'- cCAGC-ACGGCGGCGGGGgcCGGUaCUCGCa -3'
miRNA:   3'- -GUUGcUGCCGCUGUUUC--GCUA-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 44675 0.78 0.219487
Target:  5'- uCGGCGACaGCGugGAAcGCGGUCCCcuGCg -3'
miRNA:   3'- -GUUGCUGcCGCugUUU-CGCUAGGG--CG- -5'
7234 5' -53.4 NC_001900.1 + 17002 0.7 0.547337
Target:  5'- gCAugGACGGCauCAAGGCGGcagccgagaccaugaUgCCCGCg -3'
miRNA:   3'- -GUugCUGCCGcuGUUUCGCU---------------A-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 44342 0.76 0.282799
Target:  5'- aCGACGACGGCGuCGAuguauccgcgaaccAG-GAUCCCGUc -3'
miRNA:   3'- -GUUGCUGCCGCuGUU--------------UCgCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 19087 0.71 0.510842
Target:  5'- uGACGAcCGGUGAcCAGGGCGuguUCCUGg -3'
miRNA:   3'- gUUGCU-GCCGCU-GUUUCGCu--AGGGCg -5'
7234 5' -53.4 NC_001900.1 + 3027 0.7 0.580199
Target:  5'- aGGCGAcCGGCGACgGguccgccuggagaucGAGCGGgcaCCCGCc -3'
miRNA:   3'- gUUGCU-GCCGCUG-U---------------UUCGCUa--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 45918 0.68 0.664643
Target:  5'- uCGAUGGCcGCGAgGAucucGCGGUCCuCGCc -3'
miRNA:   3'- -GUUGCUGcCGCUgUUu---CGCUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 5971 0.74 0.339411
Target:  5'- aCGGCGACGGC-AUggGGCcg-CCCGCu -3'
miRNA:   3'- -GUUGCUGCCGcUGuuUCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 10395 0.71 0.489851
Target:  5'- gCAACGGCcagGGCGugAucccgcguGAGCGggCUCGCa -3'
miRNA:   3'- -GUUGCUG---CCGCugU--------UUCGCuaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.