miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 7013 1.12 0.000943
Target:  5'- aCAACGACGGCGACAAAGCGAUCCCGCu -3'
miRNA:   3'- -GUUGCUGCCGCUGUUUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 19382 0.8 0.145594
Target:  5'- uCGugGACGGguuCGACAAGGCGuAUCCCGg -3'
miRNA:   3'- -GUugCUGCC---GCUGUUUCGC-UAGGGCg -5'
7234 5' -53.4 NC_001900.1 + 27140 0.79 0.186686
Target:  5'- -cGCGAUGGUGAuCGcGGCGAUUCCGCc -3'
miRNA:   3'- guUGCUGCCGCU-GUuUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 32176 0.79 0.191836
Target:  5'- gCGGCGAUGGCGACGAucccgacGcCGAUCCaCGCu -3'
miRNA:   3'- -GUUGCUGCCGCUGUUu------C-GCUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 44675 0.78 0.219487
Target:  5'- uCGGCGACaGCGugGAAcGCGGUCCCcuGCg -3'
miRNA:   3'- -GUUGCUGcCGCugUUU-CGCUAGGG--CG- -5'
7234 5' -53.4 NC_001900.1 + 16073 0.77 0.250469
Target:  5'- --cUGGCGGCGA-AGAGCGGUUCUGCa -3'
miRNA:   3'- guuGCUGCCGCUgUUUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 44342 0.76 0.282799
Target:  5'- aCGACGACGGCGuCGAuguauccgcgaaccAG-GAUCCCGUc -3'
miRNA:   3'- -GUUGCUGCCGCuGUU--------------UCgCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 5971 0.74 0.339411
Target:  5'- aCGGCGACGGC-AUggGGCcg-CCCGCu -3'
miRNA:   3'- -GUUGCUGCCGcUGuuUCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 41232 0.74 0.373751
Target:  5'- uGACGGCcGCGAC--GGUGAUCCaCGCu -3'
miRNA:   3'- gUUGCUGcCGCUGuuUCGCUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 13074 0.73 0.391783
Target:  5'- --cCGACGGCGaACAucGCGAUCauGCu -3'
miRNA:   3'- guuGCUGCCGC-UGUuuCGCUAGggCG- -5'
7234 5' -53.4 NC_001900.1 + 8697 0.73 0.391783
Target:  5'- ---aGuACGGCGGCGAAGUGc-CCCGCg -3'
miRNA:   3'- guugC-UGCCGCUGUUUCGCuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 381 0.73 0.395457
Target:  5'- gCGACGACaGCGACAgcGUGAcgacagcccgacagCCCGCg -3'
miRNA:   3'- -GUUGCUGcCGCUGUuuCGCUa-------------GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 9046 0.73 0.410373
Target:  5'- uCGGCGACGGCuACGAGGCcAUgcaCCUGCg -3'
miRNA:   3'- -GUUGCUGCCGcUGUUUCGcUA---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 48505 0.72 0.439259
Target:  5'- aAACGGCGGCGuauucGCGAUgUCGCg -3'
miRNA:   3'- gUUGCUGCCGCuguuuCGCUAgGGCG- -5'
7234 5' -53.4 NC_001900.1 + 13017 0.72 0.439259
Target:  5'- uCAGCGGCGGCGGCGAGGgcUGAgCCUa- -3'
miRNA:   3'- -GUUGCUGCCGCUGUUUC--GCUaGGGcg -5'
7234 5' -53.4 NC_001900.1 + 12863 0.72 0.478479
Target:  5'- aCGACGACGGCGuCGucccggaGAGgGGUUCgGCu -3'
miRNA:   3'- -GUUGCUGCCGCuGU-------UUCgCUAGGgCG- -5'
7234 5' -53.4 NC_001900.1 + 10395 0.71 0.489851
Target:  5'- gCAACGGCcagGGCGugAucccgcguGAGCGggCUCGCa -3'
miRNA:   3'- -GUUGCUG---CCGCugU--------UUCGCuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 18761 0.71 0.489851
Target:  5'- -uACGuCGGCG-CAGcgGGCGAUgaCCCGCu -3'
miRNA:   3'- guUGCuGCCGCuGUU--UCGCUA--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 9760 0.71 0.500298
Target:  5'- uUAGCGAcccccacgggcuCGGCG-CGGucccGGUGGUCCCGCu -3'
miRNA:   3'- -GUUGCU------------GCCGCuGUU----UCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 19087 0.71 0.510842
Target:  5'- uGACGAcCGGUGAcCAGGGCGuguUCCUGg -3'
miRNA:   3'- gUUGCU-GCCGCU-GUUUCGCu--AGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.