miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 381 0.73 0.395457
Target:  5'- gCGACGACaGCGACAgcGUGAcgacagcccgacagCCCGCg -3'
miRNA:   3'- -GUUGCUGcCGCUGUuuCGCUa-------------GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 1243 0.67 0.751425
Target:  5'- uCggUGGCGGCGGC--AGCGGagCUgGCg -3'
miRNA:   3'- -GuuGCUGCCGCUGuuUCGCUa-GGgCG- -5'
7234 5' -53.4 NC_001900.1 + 1341 0.71 0.510842
Target:  5'- aAGCGuGCGGCGuuCAAcgcgcuGGCGGUCgCCGCc -3'
miRNA:   3'- gUUGC-UGCCGCu-GUU------UCGCUAG-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 3027 0.7 0.580199
Target:  5'- aGGCGAcCGGCGACgGguccgccuggagaucGAGCGGgcaCCCGCc -3'
miRNA:   3'- gUUGCU-GCCGCUG-U---------------UUCGCUa--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 3122 0.68 0.70865
Target:  5'- aAGCGAUGGagcgcgaaGGCGAGGaccgcgaGAUCCuCGCg -3'
miRNA:   3'- gUUGCUGCCg-------CUGUUUCg------CUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 5006 0.71 0.510842
Target:  5'- cCAGC-ACGGCGGCGGGGgcCGGUaCUCGCa -3'
miRNA:   3'- -GUUGcUGCCGCUGUUUC--GCUA-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 5148 0.67 0.772114
Target:  5'- -uACGACGGCGcACGcgccugGAaCGA-CCCGCu -3'
miRNA:   3'- guUGCUGCCGC-UGU------UUcGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 5460 0.7 0.575789
Target:  5'- ---aGACGGCGGCGGuccuGCGGaugCaCCGCg -3'
miRNA:   3'- guugCUGCCGCUGUUu---CGCUa--G-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 5971 0.74 0.339411
Target:  5'- aCGGCGACGGC-AUggGGCcg-CCCGCu -3'
miRNA:   3'- -GUUGCUGCCGcUGuuUCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 6012 0.68 0.686754
Target:  5'- -cGCGAgcCGGUGACcuccgcgagcuGGAGCGAguugUCCGCg -3'
miRNA:   3'- guUGCU--GCCGCUG-----------UUUCGCUa---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 7013 1.12 0.000943
Target:  5'- aCAACGACGGCGACAAAGCGAUCCCGCu -3'
miRNA:   3'- -GUUGCUGCCGCUGUUUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 8697 0.73 0.391783
Target:  5'- ---aGuACGGCGGCGAAGUGc-CCCGCg -3'
miRNA:   3'- guugC-UGCCGCUGUUUCGCuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 8871 0.69 0.609007
Target:  5'- gAugGGgGGCGGCAuGGUGGUCgaaaUCGCg -3'
miRNA:   3'- gUugCUgCCGCUGUuUCGCUAG----GGCG- -5'
7234 5' -53.4 NC_001900.1 + 9046 0.73 0.410373
Target:  5'- uCGGCGACGGCuACGAGGCcAUgcaCCUGCg -3'
miRNA:   3'- -GUUGCUGCCGcUGUUUCGcUA---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 9760 0.71 0.500298
Target:  5'- uUAGCGAcccccacgggcuCGGCG-CGGucccGGUGGUCCCGCu -3'
miRNA:   3'- -GUUGCU------------GCCGCuGUU----UCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 10395 0.71 0.489851
Target:  5'- gCAACGGCcagGGCGugAucccgcguGAGCGggCUCGCa -3'
miRNA:   3'- -GUUGCUG---CCGCugU--------UUCGCuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 10396 0.69 0.63127
Target:  5'- --cCGA-GGCuGCcuGGCGAUCCCGUa -3'
miRNA:   3'- guuGCUgCCGcUGuuUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 12611 0.67 0.772114
Target:  5'- gAACGACGGCaa-GAAGUGGaCCCa- -3'
miRNA:   3'- gUUGCUGCCGcugUUUCGCUaGGGcg -5'
7234 5' -53.4 NC_001900.1 + 12863 0.72 0.478479
Target:  5'- aCGACGACGGCGuCGucccggaGAGgGGUUCgGCu -3'
miRNA:   3'- -GUUGCUGCCGCuGU-------UUCgCUAGGgCG- -5'
7234 5' -53.4 NC_001900.1 + 13017 0.72 0.439259
Target:  5'- uCAGCGGCGGCGGCGAGGgcUGAgCCUa- -3'
miRNA:   3'- -GUUGCUGCCGCUGUUUC--GCUaGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.