miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7236 3' -54.4 NC_001900.1 + 6375 0.66 0.746177
Target:  5'- uGGCaCGcUGACCAccuCCC-CGGUGGAUCa -3'
miRNA:   3'- -CUG-GU-ACUGGUu--GGGuGCCGUCUAGg -5'
7236 3' -54.4 NC_001900.1 + 25481 0.66 0.746177
Target:  5'- cGCCAgcgUGGCU--CCCACGGCccggAGGUCg -3'
miRNA:   3'- cUGGU---ACUGGuuGGGUGCCG----UCUAGg -5'
7236 3' -54.4 NC_001900.1 + 41645 0.66 0.745121
Target:  5'- uGCCAUGACgGGCCgAUaaugugaGGCGGAgacggggcaagcUCCg -3'
miRNA:   3'- cUGGUACUGgUUGGgUG-------CCGUCU------------AGG- -5'
7236 3' -54.4 NC_001900.1 + 11800 0.66 0.73556
Target:  5'- gGGCCGUGuacgaCGGCCCuguCGGC--GUCCa -3'
miRNA:   3'- -CUGGUACug---GUUGGGu--GCCGucUAGG- -5'
7236 3' -54.4 NC_001900.1 + 41317 0.66 0.73556
Target:  5'- gGGCaCAUGACCGuuugucguuuaAgCCAgGGCGGuUCCc -3'
miRNA:   3'- -CUG-GUACUGGU-----------UgGGUgCCGUCuAGG- -5'
7236 3' -54.4 NC_001900.1 + 39810 0.66 0.724835
Target:  5'- uGGCCGUGcucagGCCGGCCUcguACGGaacGAUCUg -3'
miRNA:   3'- -CUGGUAC-----UGGUUGGG---UGCCgu-CUAGG- -5'
7236 3' -54.4 NC_001900.1 + 30538 0.66 0.724835
Target:  5'- aGACCGUGuCCAucCCCGCGuacguCAGGuacUCCg -3'
miRNA:   3'- -CUGGUACuGGUu-GGGUGCc----GUCU---AGG- -5'
7236 3' -54.4 NC_001900.1 + 19549 0.66 0.724835
Target:  5'- cGCCGUGGCCGugggaggaacuGCCCaaggagacGCuGCGGAUCa -3'
miRNA:   3'- cUGGUACUGGU-----------UGGG--------UGcCGUCUAGg -5'
7236 3' -54.4 NC_001900.1 + 9694 0.66 0.724835
Target:  5'- gGAUCcUGGCC-ACCUACGGCAucaCCg -3'
miRNA:   3'- -CUGGuACUGGuUGGGUGCCGUcuaGG- -5'
7236 3' -54.4 NC_001900.1 + 9614 0.66 0.724835
Target:  5'- cGCCAaGuaucCCGGCCCACGGU-GcgCCa -3'
miRNA:   3'- cUGGUaCu---GGUUGGGUGCCGuCuaGG- -5'
7236 3' -54.4 NC_001900.1 + 29490 0.66 0.724835
Target:  5'- cGACCuUGAuCCGcagcgucuCCUugGGCAGuUCCu -3'
miRNA:   3'- -CUGGuACU-GGUu-------GGGugCCGUCuAGG- -5'
7236 3' -54.4 NC_001900.1 + 10640 0.66 0.712929
Target:  5'- aGGCCGUGAUCAcugcgggGCUCGCcgGGUAcGUCCa -3'
miRNA:   3'- -CUGGUACUGGU-------UGGGUG--CCGUcUAGG- -5'
7236 3' -54.4 NC_001900.1 + 48581 0.66 0.703113
Target:  5'- aGGCCA-GACgCAACCCacuaGCGGCcGGUagCCg -3'
miRNA:   3'- -CUGGUaCUG-GUUGGG----UGCCGuCUA--GG- -5'
7236 3' -54.4 NC_001900.1 + 17666 0.66 0.703113
Target:  5'- cACCAcgcUGGCCGacACCCuCGGCAcGAUgCu -3'
miRNA:   3'- cUGGU---ACUGGU--UGGGuGCCGU-CUAgG- -5'
7236 3' -54.4 NC_001900.1 + 27031 0.66 0.702019
Target:  5'- cGACCGUGGCCcugagccGACacgguugguacgCCugGGCGcugcuGAUCCu -3'
miRNA:   3'- -CUGGUACUGG-------UUG------------GGugCCGU-----CUAGG- -5'
7236 3' -54.4 NC_001900.1 + 28570 0.67 0.69214
Target:  5'- cACCAcuUGGCCGGCCCGaagauGAUCCa -3'
miRNA:   3'- cUGGU--ACUGGUUGGGUgccguCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 15399 0.67 0.692139
Target:  5'- cGCCuUGGCCAccacGCCCACaaGGcCGGuGUCCg -3'
miRNA:   3'- cUGGuACUGGU----UGGGUG--CC-GUC-UAGG- -5'
7236 3' -54.4 NC_001900.1 + 24907 0.67 0.692139
Target:  5'- uACCGaGACCgGACCUacgACGGCGGcgCUa -3'
miRNA:   3'- cUGGUaCUGG-UUGGG---UGCCGUCuaGG- -5'
7236 3' -54.4 NC_001900.1 + 16655 0.67 0.681107
Target:  5'- aGGCCAaGGCCGACUUcaaGCGGCugauGAUgCa -3'
miRNA:   3'- -CUGGUaCUGGUUGGG---UGCCGu---CUAgG- -5'
7236 3' -54.4 NC_001900.1 + 5964 0.67 0.681107
Target:  5'- uGGCUGcUGaACCGGCCaggccgcaGCGGCuGAUCCu -3'
miRNA:   3'- -CUGGU-AC-UGGUUGGg-------UGCCGuCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.