miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7238 5' -63.6 NC_001900.1 + 42497 0.66 0.305246
Target:  5'- aGG-GCugCGugugcgggucgaacGGCUGGCUguaGGCCGGUUg -3'
miRNA:   3'- gCCgCGugGC--------------UCGACCGG---CCGGCUAG- -5'
7238 5' -63.6 NC_001900.1 + 47979 0.66 0.286171
Target:  5'- aGGgGCACCGccGCUa-CCGGCgGAUCc -3'
miRNA:   3'- gCCgCGUGGCu-CGAccGGCCGgCUAG- -5'
7238 5' -63.6 NC_001900.1 + 17518 0.66 0.275318
Target:  5'- aGGCGUACCGGGgUGGCaUGaagcagaaggaucucGCCGAc- -3'
miRNA:   3'- gCCGCGUGGCUCgACCG-GC---------------CGGCUag -5'
7238 5' -63.6 NC_001900.1 + 48647 0.66 0.271995
Target:  5'- gGGUGCugUGAGCUGcacaaucGCgGGCUG-UCg -3'
miRNA:   3'- gCCGCGugGCUCGAC-------CGgCCGGCuAG- -5'
7238 5' -63.6 NC_001900.1 + 3383 0.66 0.266094
Target:  5'- aGGUGUGgUGAgGCcGGCCGGCCGugagCg -3'
miRNA:   3'- gCCGCGUgGCU-CGaCCGGCCGGCua--G- -5'
7238 5' -63.6 NC_001900.1 + 11971 0.66 0.266094
Target:  5'- aGGUGguCCGGGCUGGaucucgacgcaCGGCCa--- -3'
miRNA:   3'- gCCGCguGGCUCGACCg----------GCCGGcuag -5'
7238 5' -63.6 NC_001900.1 + 25883 0.66 0.265444
Target:  5'- cCGGCcagcuCACCGAucuGCUcGGCCGGCucaacgaCGGUCu -3'
miRNA:   3'- -GCCGc----GUGGCU---CGA-CCGGCCG-------GCUAG- -5'
7238 5' -63.6 NC_001900.1 + 16935 0.67 0.259659
Target:  5'- uGGCcUACUG-GCUGGCCuGCCG-UCg -3'
miRNA:   3'- gCCGcGUGGCuCGACCGGcCGGCuAG- -5'
7238 5' -63.6 NC_001900.1 + 912 0.67 0.253352
Target:  5'- aGGCGCuuuuCCGcGCUGGCCuccaGGaacuccUCGAUCg -3'
miRNA:   3'- gCCGCGu---GGCuCGACCGG----CC------GGCUAG- -5'
7238 5' -63.6 NC_001900.1 + 41223 0.67 0.253352
Target:  5'- uGGUGCAgCGGGUUGGCCuuGCgGggCa -3'
miRNA:   3'- gCCGCGUgGCUCGACCGGc-CGgCuaG- -5'
7238 5' -63.6 NC_001900.1 + 42565 0.67 0.253352
Target:  5'- -aGCGgGCCGAGCUGGgggaCCGcGCCGu-- -3'
miRNA:   3'- gcCGCgUGGCUCGACC----GGC-CGGCuag -5'
7238 5' -63.6 NC_001900.1 + 23153 0.67 0.241116
Target:  5'- gGGCGaggaccagACCGucGUUGaGCCGGCCGAg- -3'
miRNA:   3'- gCCGCg-------UGGCu-CGAC-CGGCCGGCUag -5'
7238 5' -63.6 NC_001900.1 + 44258 0.68 0.218124
Target:  5'- gCGaGCGCguacacGCCGAGCUGGaagucgucucCCGGuuGGUUc -3'
miRNA:   3'- -GC-CGCG------UGGCUCGACC----------GGCCggCUAG- -5'
7238 5' -63.6 NC_001900.1 + 20955 0.68 0.218124
Target:  5'- cCGGCGgucgucaACCuGGCUGGagaCGGCCaGGUCg -3'
miRNA:   3'- -GCCGCg------UGGcUCGACCg--GCCGG-CUAG- -5'
7238 5' -63.6 NC_001900.1 + 9331 0.68 0.197032
Target:  5'- uGGCugACCcgGAGCUGG-CGGCUGAUCu -3'
miRNA:   3'- gCCGcgUGG--CUCGACCgGCCGGCUAG- -5'
7238 5' -63.6 NC_001900.1 + 12252 0.68 0.197032
Target:  5'- aCGGCaaccacgucaaGC-CCGAGCUGGUUccgaucgucggaGGCCGAUUc -3'
miRNA:   3'- -GCCG-----------CGuGGCUCGACCGG------------CCGGCUAG- -5'
7238 5' -63.6 NC_001900.1 + 6497 0.69 0.182402
Target:  5'- aCGGCGCGgucccccagcUCGGcccGCUGGCCaGCCaGAUCc -3'
miRNA:   3'- -GCCGCGU----------GGCU---CGACCGGcCGG-CUAG- -5'
7238 5' -63.6 NC_001900.1 + 1249 0.69 0.182402
Target:  5'- gCGGCGgcaGCgGAGCUGGC-GGCgGGUUc -3'
miRNA:   3'- -GCCGCg--UGgCUCGACCGgCCGgCUAG- -5'
7238 5' -63.6 NC_001900.1 + 39795 0.7 0.160149
Target:  5'- aGGCGUuggugaucuugGCCGuGCUcaGGCCGGCCucguacggaacGAUCu -3'
miRNA:   3'- gCCGCG-----------UGGCuCGA--CCGGCCGG-----------CUAG- -5'
7238 5' -63.6 NC_001900.1 + 17249 0.71 0.136335
Target:  5'- uGGCGaguucuuCACCGGGCUcgGGCCGGUC-AUCu -3'
miRNA:   3'- gCCGC-------GUGGCUCGA--CCGGCCGGcUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.