miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7245 5' -53.3 NC_001900.1 + 12760 0.66 0.79119
Target:  5'- cGGGGUgaGUCGACcaAUCGguaCCUG-GUCGACa -3'
miRNA:   3'- -UCCCG--UAGUUG--UAGC---GGAUgCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 18050 0.66 0.770779
Target:  5'- cGGGCucAUCAGaacUGCCUcgcCGUCGACa -3'
miRNA:   3'- uCCCG--UAGUUguaGCGGAu--GCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 34380 0.66 0.749765
Target:  5'- cGGGGCGUUGGCGUuccugauccCGCCgAUG-CGGCg -3'
miRNA:   3'- -UCCCGUAGUUGUA---------GCGGaUGCaGCUG- -5'
7245 5' -53.3 NC_001900.1 + 6228 0.67 0.739064
Target:  5'- -cGGCAUCcugGGCAUCGCCcugaucugggGCGggaUCGACg -3'
miRNA:   3'- ucCCGUAG---UUGUAGCGGa---------UGC---AGCUG- -5'
7245 5' -53.3 NC_001900.1 + 35351 0.67 0.728248
Target:  5'- cGuGGUcgC-ACAUCGCg-GCGUCGACu -3'
miRNA:   3'- uC-CCGuaGuUGUAGCGgaUGCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 16893 0.67 0.728248
Target:  5'- cGGGauCGUCGcCAUCGCCgcgccgcuUGUCGGCu -3'
miRNA:   3'- uCCC--GUAGUuGUAGCGGau------GCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 14714 0.67 0.727161
Target:  5'- uAGGGCAcaUCAACcUCGCg-GCGUucguuacCGACg -3'
miRNA:   3'- -UCCCGU--AGUUGuAGCGgaUGCA-------GCUG- -5'
7245 5' -53.3 NC_001900.1 + 47571 0.67 0.717332
Target:  5'- -uGGCGUCGucCAUCGCCUGCuucaggguGUCGuaGCg -3'
miRNA:   3'- ucCCGUAGUu-GUAGCGGAUG--------CAGC--UG- -5'
7245 5' -53.3 NC_001900.1 + 32323 0.67 0.717332
Target:  5'- gGGGGaaucCGGCAUCGCUgaagAUGUgGACg -3'
miRNA:   3'- -UCCCgua-GUUGUAGCGGa---UGCAgCUG- -5'
7245 5' -53.3 NC_001900.1 + 21964 0.67 0.717332
Target:  5'- uGGGCGUgGgccACGUUGCCcGCGacCGACa -3'
miRNA:   3'- uCCCGUAgU---UGUAGCGGaUGCa-GCUG- -5'
7245 5' -53.3 NC_001900.1 + 39155 0.67 0.706327
Target:  5'- uGGGGCAcgcccaUCAGCuccgcaGUCGCCUGCaUCaGCa -3'
miRNA:   3'- -UCCCGU------AGUUG------UAGCGGAUGcAGcUG- -5'
7245 5' -53.3 NC_001900.1 + 45349 0.67 0.705222
Target:  5'- cAGGGUGUCGGugaccguCAUCuCC-ACGUCGACc -3'
miRNA:   3'- -UCCCGUAGUU-------GUAGcGGaUGCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 13362 0.67 0.695246
Target:  5'- aAGGGCAcCAAgguCAUCGuCCaGCG-CGACg -3'
miRNA:   3'- -UCCCGUaGUU---GUAGC-GGaUGCaGCUG- -5'
7245 5' -53.3 NC_001900.1 + 37238 0.68 0.672903
Target:  5'- -cGGCgGUCGugGUUGCCUuCGUgGACg -3'
miRNA:   3'- ucCCG-UAGUugUAGCGGAuGCAgCUG- -5'
7245 5' -53.3 NC_001900.1 + 38707 0.68 0.650397
Target:  5'- uGGcGGCGUCAGCcuUCGCggcgUACGUCGGg -3'
miRNA:   3'- -UC-CCGUAGUUGu-AGCGg---AUGCAGCUg -5'
7245 5' -53.3 NC_001900.1 + 31515 0.68 0.643628
Target:  5'- cGGGCAUCAGCGcgaugaacagaUCaCCgaucccguugacgaGCGUCGACa -3'
miRNA:   3'- uCCCGUAGUUGU-----------AGcGGa-------------UGCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 15438 0.69 0.616533
Target:  5'- gAGGGCGUgGAUGUCGCCgcCGaUCuGCa -3'
miRNA:   3'- -UCCCGUAgUUGUAGCGGauGC-AGcUG- -5'
7245 5' -53.3 NC_001900.1 + 16708 0.69 0.594011
Target:  5'- cGaGGUGUCAACAUCcccgucgauGUCaACGUCGACa -3'
miRNA:   3'- uC-CCGUAGUUGUAG---------CGGaUGCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 32434 0.7 0.549446
Target:  5'- uGGGCcgcguucagGUCGGCGUUGaCCggaACGUCGGCc -3'
miRNA:   3'- uCCCG---------UAGUUGUAGC-GGa--UGCAGCUG- -5'
7245 5' -53.3 NC_001900.1 + 40823 0.7 0.51671
Target:  5'- gAGaGCGUCGuACAUCauGCCUGUGUCGACg -3'
miRNA:   3'- -UCcCGUAGU-UGUAG--CGGAUGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.