miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 24495 0.66 0.956559
Target:  5'- aGCGUucgaccCGGUGCUGAcuCCGGucacGGCGGUCg -3'
miRNA:   3'- -CGUA------GCUACGGCUauGGUU----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 11678 0.69 0.832735
Target:  5'- cGCAgUCGAaGCCGcagUCAAGGCGGCg -3'
miRNA:   3'- -CGU-AGCUaCGGCuauGGUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 38021 0.69 0.859664
Target:  5'- cGgGUUGAUaGCCGAUGaucggcUCGAAAUGGUCg -3'
miRNA:   3'- -CgUAGCUA-CGGCUAU------GGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 40290 0.68 0.891919
Target:  5'- --cUCGAccgugugGCCGGUcggcagugaGCCGcuGCGGCCg -3'
miRNA:   3'- cguAGCUa------CGGCUA---------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 1173 0.67 0.913125
Target:  5'- gGCggCGGUGgaGccGCCgGAAGCGGCCg -3'
miRNA:   3'- -CGuaGCUACggCuaUGG-UUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 25162 0.66 0.960671
Target:  5'- cGCAgaggcUCGG-GCCGGguaCGAGGCGaGCCu -3'
miRNA:   3'- -CGU-----AGCUaCGGCUaugGUUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 39109 0.66 0.950789
Target:  5'- gGCcUCGAUcGgcgcuaugcgcuccCCGAUgACCuGGACGGCCg -3'
miRNA:   3'- -CGuAGCUA-C--------------GGCUA-UGGuUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 23170 0.66 0.942501
Target:  5'- uCGUUGAgccgGCCGAgcagAUCGguGAGCuGGCCg -3'
miRNA:   3'- cGUAGCUa---CGGCUa---UGGU--UUUG-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 42734 0.67 0.937226
Target:  5'- --cUCGAUGUCGuugACCAucucGCGGaCCu -3'
miRNA:   3'- cguAGCUACGGCua-UGGUuu--UGCC-GG- -5'
7249 5' -49.3 NC_001900.1 + 51 0.67 0.931652
Target:  5'- aGCA-CGG-GCCGAcGCUAGAGC-GCCu -3'
miRNA:   3'- -CGUaGCUaCGGCUaUGGUUUUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 2678 0.69 0.868136
Target:  5'- cGCAacugCGGUGCCugcuacaacGCCA--GCGGCCa -3'
miRNA:   3'- -CGUa---GCUACGGcua------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20823 0.69 0.859664
Target:  5'- cCGUCGAcUGCaCGAcgcUACCGAcgaGGCCg -3'
miRNA:   3'- cGUAGCU-ACG-GCU---AUGGUUuugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38995 0.69 0.850934
Target:  5'- uGCGUUGGUGaaGuugGCCAGcuCGGCUg -3'
miRNA:   3'- -CGUAGCUACggCua-UGGUUuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20043 0.68 0.87634
Target:  5'- gGCGUCuacaccGCCGAUGuccCCGAAGguCGGCCu -3'
miRNA:   3'- -CGUAGcua---CGGCUAU---GGUUUU--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5944 0.68 0.88349
Target:  5'- cGCAgcUCGAUGCUcugggcuGGcUGCUGAAcCGGCCa -3'
miRNA:   3'- -CGU--AGCUACGG-------CU-AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4394 0.66 0.942501
Target:  5'- cGCGUUccacGCUGucGCCGAGGCGGUCg -3'
miRNA:   3'- -CGUAGcua-CGGCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 32067 0.69 0.850934
Target:  5'- cGCcUUGAUGCCGuccAUGCCGAGuGCGaCCa -3'
miRNA:   3'- -CGuAGCUACGGC---UAUGGUUU-UGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 15588 0.67 0.919601
Target:  5'- gGUGUCGAUGaaGAgugcGCCA--ACGGCg -3'
miRNA:   3'- -CGUAGCUACggCUa---UGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 23666 0.67 0.919601
Target:  5'- cGCAUggCGAUGaaG-UACCA-GAUGGCCu -3'
miRNA:   3'- -CGUA--GCUACggCuAUGGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 8764 0.67 0.919601
Target:  5'- cGCAgCGGcucacUGCCGAccgGCCAc-ACGGUCg -3'
miRNA:   3'- -CGUaGCU-----ACGGCUa--UGGUuuUGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.