Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7249 | 5' | -49.3 | NC_001900.1 | + | 24495 | 0.66 | 0.956559 |
Target: 5'- aGCGUucgaccCGGUGCUGAcuCCGGucacGGCGGUCg -3' miRNA: 3'- -CGUA------GCUACGGCUauGGUU----UUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 11678 | 0.69 | 0.832735 |
Target: 5'- cGCAgUCGAaGCCGcagUCAAGGCGGCg -3' miRNA: 3'- -CGU-AGCUaCGGCuauGGUUUUGCCGg -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 38021 | 0.69 | 0.859664 |
Target: 5'- cGgGUUGAUaGCCGAUGaucggcUCGAAAUGGUCg -3' miRNA: 3'- -CgUAGCUA-CGGCUAU------GGUUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 40290 | 0.68 | 0.891919 |
Target: 5'- --cUCGAccgugugGCCGGUcggcagugaGCCGcuGCGGCCg -3' miRNA: 3'- cguAGCUa------CGGCUA---------UGGUuuUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 1173 | 0.67 | 0.913125 |
Target: 5'- gGCggCGGUGgaGccGCCgGAAGCGGCCg -3' miRNA: 3'- -CGuaGCUACggCuaUGG-UUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 25162 | 0.66 | 0.960671 |
Target: 5'- cGCAgaggcUCGG-GCCGGguaCGAGGCGaGCCu -3' miRNA: 3'- -CGU-----AGCUaCGGCUaugGUUUUGC-CGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 39109 | 0.66 | 0.950789 |
Target: 5'- gGCcUCGAUcGgcgcuaugcgcuccCCGAUgACCuGGACGGCCg -3' miRNA: 3'- -CGuAGCUA-C--------------GGCUA-UGGuUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 23170 | 0.66 | 0.942501 |
Target: 5'- uCGUUGAgccgGCCGAgcagAUCGguGAGCuGGCCg -3' miRNA: 3'- cGUAGCUa---CGGCUa---UGGU--UUUG-CCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 42734 | 0.67 | 0.937226 |
Target: 5'- --cUCGAUGUCGuugACCAucucGCGGaCCu -3' miRNA: 3'- cguAGCUACGGCua-UGGUuu--UGCC-GG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 51 | 0.67 | 0.931652 |
Target: 5'- aGCA-CGG-GCCGAcGCUAGAGC-GCCu -3' miRNA: 3'- -CGUaGCUaCGGCUaUGGUUUUGcCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 2678 | 0.69 | 0.868136 |
Target: 5'- cGCAacugCGGUGCCugcuacaacGCCA--GCGGCCa -3' miRNA: 3'- -CGUa---GCUACGGcua------UGGUuuUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 20823 | 0.69 | 0.859664 |
Target: 5'- cCGUCGAcUGCaCGAcgcUACCGAcgaGGCCg -3' miRNA: 3'- cGUAGCU-ACG-GCU---AUGGUUuugCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 38995 | 0.69 | 0.850934 |
Target: 5'- uGCGUUGGUGaaGuugGCCAGcuCGGCUg -3' miRNA: 3'- -CGUAGCUACggCua-UGGUUuuGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 20043 | 0.68 | 0.87634 |
Target: 5'- gGCGUCuacaccGCCGAUGuccCCGAAGguCGGCCu -3' miRNA: 3'- -CGUAGcua---CGGCUAU---GGUUUU--GCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 5944 | 0.68 | 0.88349 |
Target: 5'- cGCAgcUCGAUGCUcugggcuGGcUGCUGAAcCGGCCa -3' miRNA: 3'- -CGU--AGCUACGG-------CU-AUGGUUUuGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 4394 | 0.66 | 0.942501 |
Target: 5'- cGCGUUccacGCUGucGCCGAGGCGGUCg -3' miRNA: 3'- -CGUAGcua-CGGCuaUGGUUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 32067 | 0.69 | 0.850934 |
Target: 5'- cGCcUUGAUGCCGuccAUGCCGAGuGCGaCCa -3' miRNA: 3'- -CGuAGCUACGGC---UAUGGUUU-UGCcGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 15588 | 0.67 | 0.919601 |
Target: 5'- gGUGUCGAUGaaGAgugcGCCA--ACGGCg -3' miRNA: 3'- -CGUAGCUACggCUa---UGGUuuUGCCGg -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 23666 | 0.67 | 0.919601 |
Target: 5'- cGCAUggCGAUGaaG-UACCA-GAUGGCCu -3' miRNA: 3'- -CGUA--GCUACggCuAUGGUuUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 8764 | 0.67 | 0.919601 |
Target: 5'- cGCAgCGGcucacUGCCGAccgGCCAc-ACGGUCg -3' miRNA: 3'- -CGUaGCU-----ACGGCUa--UGGUuuUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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