miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 38021 0.69 0.859664
Target:  5'- cGgGUUGAUaGCCGAUGaucggcUCGAAAUGGUCg -3'
miRNA:   3'- -CgUAGCUA-CGGCUAU------GGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 39367 0.69 0.850934
Target:  5'- aGCggUGAUGCCGuaggugGCCAGGAUccgGGUCu -3'
miRNA:   3'- -CGuaGCUACGGCua----UGGUUUUG---CCGG- -5'
7249 5' -49.3 NC_001900.1 + 47966 0.71 0.77299
Target:  5'- aGUcgUGAUGCCgcGAUACCAAAGCucaGGUa -3'
miRNA:   3'- -CGuaGCUACGG--CUAUGGUUUUG---CCGg -5'
7249 5' -49.3 NC_001900.1 + 23754 0.74 0.616269
Target:  5'- gGCAUCGAgaagGUCGAguucUACaAGAACGGCUc -3'
miRNA:   3'- -CGUAGCUa---CGGCU----AUGgUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 51 0.67 0.931652
Target:  5'- aGCA-CGG-GCCGAcGCUAGAGC-GCCu -3'
miRNA:   3'- -CGUaGCUaCGGCUaUGGUUUUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 24610 0.68 0.89928
Target:  5'- gGCAUgGGcuccgccacUGCgUGggGCCAAGGCGGCUu -3'
miRNA:   3'- -CGUAgCU---------ACG-GCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18486 0.69 0.832735
Target:  5'- uCAUCGAgaagGCCaagGCCcuGGCGGCUg -3'
miRNA:   3'- cGUAGCUa---CGGcuaUGGuuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 33778 0.75 0.548067
Target:  5'- gGCGUCucgGCCGA-ACCGu-GCGGCCa -3'
miRNA:   3'- -CGUAGcuaCGGCUaUGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 40290 0.68 0.891919
Target:  5'- --cUCGAccgugugGCCGGUcggcagugaGCCGcuGCGGCCg -3'
miRNA:   3'- cguAGCUa------CGGCUA---------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 34969 0.76 0.481347
Target:  5'- -aGUgGGUGUCGAUcaggucgACCAAGGCGGCUg -3'
miRNA:   3'- cgUAgCUACGGCUA-------UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 3535 0.69 0.841954
Target:  5'- cCAUCGAcgcggcGCuCGggGCCGGuAACGGCCu -3'
miRNA:   3'- cGUAGCUa-----CG-GCuaUGGUU-UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 3928 0.68 0.875532
Target:  5'- aGCuggcCGAgacGCCGGUACCcgccuccacggcgAAcGCGGCCg -3'
miRNA:   3'- -CGua--GCUa--CGGCUAUGG-------------UUuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 17010 0.7 0.81751
Target:  5'- gGCAUCaaggcggcaGCCGAgACCAugaugcccgcgcuggAAGCGGCCa -3'
miRNA:   3'- -CGUAGcua------CGGCUaUGGU---------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18149 0.7 0.79367
Target:  5'- uGCGUCGgcGCagucGCCGAGugGGUCg -3'
miRNA:   3'- -CGUAGCuaCGgcuaUGGUUUugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5628 0.72 0.694042
Target:  5'- gGCAUCGGUGCCGccugguacuggACCGucGAGCGcCCa -3'
miRNA:   3'- -CGUAGCUACGGCua---------UGGU--UUUGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 31318 0.73 0.63923
Target:  5'- -uGUCGGUGCCGcccguGUACC-GGACGGUg -3'
miRNA:   3'- cgUAGCUACGGC-----UAUGGuUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 16724 0.67 0.937226
Target:  5'- cCGUCGAUGUCaacgucgacaagGAcACCAAGgGCGGCUu -3'
miRNA:   3'- cGUAGCUACGG------------CUaUGGUUU-UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 12652 0.67 0.931652
Target:  5'- uCAcCGA-GCCGAU-CCuGAACGGCg -3'
miRNA:   3'- cGUaGCUaCGGCUAuGGuUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 43059 0.67 0.923956
Target:  5'- aCAUCGGgugagGCCGAUcaugguugcccaggAUCAGccgcuuGCGGCCu -3'
miRNA:   3'- cGUAGCUa----CGGCUA--------------UGGUUu-----UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18030 0.68 0.902144
Target:  5'- uCAUCG-UGCCGGUGguCCAGaucgucaucaaccugGcuGCGGCCg -3'
miRNA:   3'- cGUAGCuACGGCUAU--GGUU---------------U--UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.