miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 8764 0.67 0.919601
Target:  5'- cGCAgCGGcucacUGCCGAccgGCCAc-ACGGUCg -3'
miRNA:   3'- -CGUaGCU-----ACGGCUa--UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 9019 0.66 0.952164
Target:  5'- aGC-UCGGggagGCCGugACCGAcaucgucggcGACGGCUa -3'
miRNA:   3'- -CGuAGCUa---CGGCuaUGGUU----------UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 9321 0.66 0.960671
Target:  5'- uCAUgGAUGCUGGcugACCcggagcuGGCGGCUg -3'
miRNA:   3'- cGUAgCUACGGCUa--UGGuu-----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 10517 0.69 0.832735
Target:  5'- gGCA-CGAUgGUCGAcGCCGAcccGACGGUCc -3'
miRNA:   3'- -CGUaGCUA-CGGCUaUGGUU---UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 10730 0.66 0.947479
Target:  5'- uUcgCGAaGUCGGUgGCCAAGACGcuGCCg -3'
miRNA:   3'- cGuaGCUaCGGCUA-UGGUUUUGC--CGG- -5'
7249 5' -49.3 NC_001900.1 + 10760 0.69 0.850934
Target:  5'- aGCGUCGGuaUGCgGAagcUGCCGAccugGGCCg -3'
miRNA:   3'- -CGUAGCU--ACGgCU---AUGGUUuug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 11678 0.69 0.832735
Target:  5'- cGCAgUCGAaGCCGcagUCAAGGCGGCg -3'
miRNA:   3'- -CGU-AGCUaCGGCuauGGUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 12285 0.72 0.696303
Target:  5'- uCGUCGGagGCCGAUucUCGGucGACGGCCa -3'
miRNA:   3'- cGUAGCUa-CGGCUAu-GGUU--UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 12652 0.67 0.931652
Target:  5'- uCAcCGA-GCCGAU-CCuGAACGGCg -3'
miRNA:   3'- cGUaGCUaCGGCUAuGGuUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 12888 0.74 0.604806
Target:  5'- gGguUCGGcUGCCGAggcgaUGCUGAAGCGaGCCg -3'
miRNA:   3'- -CguAGCU-ACGGCU-----AUGGUUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 14872 0.73 0.67359
Target:  5'- cGCAUCGGUGuuGGgcACCucgGAGUGGCCu -3'
miRNA:   3'- -CGUAGCUACggCUa-UGGu--UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15275 0.67 0.925777
Target:  5'- -gGUCGAgGCCGugGCCGcacgguuCGGCCg -3'
miRNA:   3'- cgUAGCUaCGGCuaUGGUuuu----GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15588 0.67 0.919601
Target:  5'- gGUGUCGAUGaaGAgugcGCCA--ACGGCg -3'
miRNA:   3'- -CGUAGCUACggCUa---UGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 15777 0.7 0.79367
Target:  5'- cCGUCGAgcugaaGCCGcUGCUGAAGCugGGCCa -3'
miRNA:   3'- cGUAGCUa-----CGGCuAUGGUUUUG--CCGG- -5'
7249 5' -49.3 NC_001900.1 + 15881 0.69 0.850934
Target:  5'- gGCGUUGAUcCCGAcgagguUGCCAAGcugGGCCa -3'
miRNA:   3'- -CGUAGCUAcGGCU------AUGGUUUug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 15931 0.74 0.604806
Target:  5'- cGCccUGAUGgaCCGGgugACCAAGAUGGCCg -3'
miRNA:   3'- -CGuaGCUAC--GGCUa--UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 16724 0.67 0.937226
Target:  5'- cCGUCGAUGUCaacgucgacaagGAcACCAAGgGCGGCUu -3'
miRNA:   3'- cGUAGCUACGG------------CUaUGGUUU-UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 17010 0.7 0.81751
Target:  5'- gGCAUCaaggcggcaGCCGAgACCAugaugcccgcgcuggAAGCGGCCa -3'
miRNA:   3'- -CGUAGcua------CGGCUaUGGU---------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18030 0.68 0.902144
Target:  5'- uCAUCG-UGCCGGUGguCCAGaucgucaucaaccugGcuGCGGCCg -3'
miRNA:   3'- cGUAGCuACGGCUAU--GGUU---------------U--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18149 0.7 0.79367
Target:  5'- uGCGUCGgcGCagucGCCGAGugGGUCg -3'
miRNA:   3'- -CGUAGCuaCGgcuaUGGUUUugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.