miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 51 0.67 0.931652
Target:  5'- aGCA-CGG-GCCGAcGCUAGAGC-GCCu -3'
miRNA:   3'- -CGUaGCUaCGGCUaUGGUUUUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 800 1.14 0.001803
Target:  5'- gGCAUCGAUGCCGAUACCAAAACGGCCc -3'
miRNA:   3'- -CGUAGCUACGGCUAUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 954 0.67 0.925777
Target:  5'- aGCAaccgCGAcUGCUGcugGCCu--ACGGCCg -3'
miRNA:   3'- -CGUa---GCU-ACGGCua-UGGuuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 1173 0.67 0.913125
Target:  5'- gGCggCGGUGgaGccGCCgGAAGCGGCCg -3'
miRNA:   3'- -CGuaGCUACggCuaUGG-UUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 2678 0.69 0.868136
Target:  5'- cGCAacugCGGUGCCugcuacaacGCCA--GCGGCCa -3'
miRNA:   3'- -CGUa---GCUACGGcua------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 3535 0.69 0.841954
Target:  5'- cCAUCGAcgcggcGCuCGggGCCGGuAACGGCCu -3'
miRNA:   3'- cGUAGCUa-----CG-GCuaUGGUU-UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 3928 0.68 0.875532
Target:  5'- aGCuggcCGAgacGCCGGUACCcgccuccacggcgAAcGCGGCCg -3'
miRNA:   3'- -CGua--GCUa--CGGCUAUGG-------------UUuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4132 0.72 0.729833
Target:  5'- uCAUC--UGCCGAccGgCGAAGCGGCCg -3'
miRNA:   3'- cGUAGcuACGGCUa-UgGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4394 0.66 0.942501
Target:  5'- cGCGUUccacGCUGucGCCGAGGCGGUCg -3'
miRNA:   3'- -CGUAGcua-CGGCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4573 0.75 0.525814
Target:  5'- aCAUCGAgcGCCGGUACaccguCGGCCu -3'
miRNA:   3'- cGUAGCUa-CGGCUAUGguuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5291 0.68 0.891919
Target:  5'- aGCAcUGcUGCCG--GCCGugcguGACGGCCu -3'
miRNA:   3'- -CGUaGCuACGGCuaUGGUu----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5349 0.66 0.942501
Target:  5'- cGCAUcgCGAUGUgGcucgcCCAGAuCGGCCa -3'
miRNA:   3'- -CGUA--GCUACGgCuau--GGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5628 0.72 0.694042
Target:  5'- gGCAUCGGUGCCGccugguacuggACCGucGAGCGcCCa -3'
miRNA:   3'- -CGUAGCUACGGCua---------UGGU--UUUGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 5675 0.69 0.850934
Target:  5'- cGCAcucagCGAccGCCGcgACCucGAAACGGUCa -3'
miRNA:   3'- -CGUa----GCUa-CGGCuaUGG--UUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5944 0.68 0.88349
Target:  5'- cGCAgcUCGAUGCUcugggcuGGcUGCUGAAcCGGCCa -3'
miRNA:   3'- -CGU--AGCUACGG-------CU-AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 6415 0.73 0.662163
Target:  5'- gGCGUCGA-GCaGGUGCUc--GCGGCCa -3'
miRNA:   3'- -CGUAGCUaCGgCUAUGGuuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 6728 0.67 0.937226
Target:  5'- aGCAUCGAggaGUCGAuUGCCA--ACGaCCu -3'
miRNA:   3'- -CGUAGCUa--CGGCU-AUGGUuuUGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 7950 0.68 0.906351
Target:  5'- aGCcUCgGGUGaUCGAgACCAAGguccACGGCCg -3'
miRNA:   3'- -CGuAG-CUAC-GGCUaUGGUUU----UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 8166 0.66 0.942501
Target:  5'- aCAUCc---CCGGcACCGAGACGGUCg -3'
miRNA:   3'- cGUAGcuacGGCUaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 8638 0.71 0.751676
Target:  5'- -gGUCGGcUGCCGGgucuCCG--ACGGCCu -3'
miRNA:   3'- cgUAGCU-ACGGCUau--GGUuuUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.