Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7249 | 5' | -49.3 | NC_001900.1 | + | 29360 | 0.78 | 0.373232 |
Target: 5'- -gGUCGGUGCCGAUcagcACCGGAcccaucuccuCGGCCa -3' miRNA: 3'- cgUAGCUACGGCUA----UGGUUUu---------GCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 18486 | 0.69 | 0.832735 |
Target: 5'- uCAUCGAgaagGCCaagGCCcuGGCGGCUg -3' miRNA: 3'- cGUAGCUa---CGGcuaUGGuuUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 39367 | 0.69 | 0.850934 |
Target: 5'- aGCggUGAUGCCGuaggugGCCAGGAUccgGGUCu -3' miRNA: 3'- -CGuaGCUACGGCua----UGGUUUUG---CCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 25162 | 0.66 | 0.960671 |
Target: 5'- cGCAgaggcUCGG-GCCGGguaCGAGGCGaGCCu -3' miRNA: 3'- -CGU-----AGCUaCGGCUaugGUUUUGC-CGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 31318 | 0.73 | 0.63923 |
Target: 5'- -uGUCGGUGCCGcccguGUACC-GGACGGUg -3' miRNA: 3'- cgUAGCUACGGC-----UAUGGuUUUGCCGg -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 6415 | 0.73 | 0.662163 |
Target: 5'- gGCGUCGA-GCaGGUGCUc--GCGGCCa -3' miRNA: 3'- -CGUAGCUaCGgCUAUGGuuuUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 5628 | 0.72 | 0.694042 |
Target: 5'- gGCAUCGGUGCCGccugguacuggACCGucGAGCGcCCa -3' miRNA: 3'- -CGUAGCUACGGCua---------UGGU--UUUGCcGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 4132 | 0.72 | 0.729833 |
Target: 5'- uCAUC--UGCCGAccGgCGAAGCGGCCg -3' miRNA: 3'- cGUAGcuACGGCUa-UgGUUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 18149 | 0.7 | 0.79367 |
Target: 5'- uGCGUCGgcGCagucGCCGAGugGGUCg -3' miRNA: 3'- -CGUAGCuaCGgcuaUGGUUUugCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 11678 | 0.69 | 0.832735 |
Target: 5'- cGCAgUCGAaGCCGcagUCAAGGCGGCg -3' miRNA: 3'- -CGU-AGCUaCGGCuauGGUUUUGCCGg -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 15777 | 0.7 | 0.79367 |
Target: 5'- cCGUCGAgcugaaGCCGcUGCUGAAGCugGGCCa -3' miRNA: 3'- cGUAGCUa-----CGGCuAUGGUUUUG--CCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 47966 | 0.71 | 0.77299 |
Target: 5'- aGUcgUGAUGCCgcGAUACCAAAGCucaGGUa -3' miRNA: 3'- -CGuaGCUACGG--CUAUGGUUUUG---CCGg -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 34969 | 0.76 | 0.481347 |
Target: 5'- -aGUgGGUGUCGAUcaggucgACCAAGGCGGCUg -3' miRNA: 3'- cgUAgCUACGGCUA-------UGGUUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 17010 | 0.7 | 0.81751 |
Target: 5'- gGCAUCaaggcggcaGCCGAgACCAugaugcccgcgcuggAAGCGGCCa -3' miRNA: 3'- -CGUAGcua------CGGCUaUGGU---------------UUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 33778 | 0.75 | 0.548067 |
Target: 5'- gGCGUCucgGCCGA-ACCGu-GCGGCCa -3' miRNA: 3'- -CGUAGcuaCGGCUaUGGUuuUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 8638 | 0.71 | 0.751676 |
Target: 5'- -gGUCGGcUGCCGGgucuCCG--ACGGCCu -3' miRNA: 3'- cgUAGCU-ACGGCUau--GGUuuUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 10517 | 0.69 | 0.832735 |
Target: 5'- gGCA-CGAUgGUCGAcGCCGAcccGACGGUCc -3' miRNA: 3'- -CGUaGCUA-CGGCUaUGGUU---UUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 3535 | 0.69 | 0.841954 |
Target: 5'- cCAUCGAcgcggcGCuCGggGCCGGuAACGGCCu -3' miRNA: 3'- cGUAGCUa-----CG-GCuaUGGUU-UUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 23754 | 0.74 | 0.616269 |
Target: 5'- gGCAUCGAgaagGUCGAguucUACaAGAACGGCUc -3' miRNA: 3'- -CGUAGCUa---CGGCU----AUGgUUUUGCCGG- -5' |
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7249 | 5' | -49.3 | NC_001900.1 | + | 24025 | 0.72 | 0.684974 |
Target: 5'- cGCGgcCGAaGCCcgcgccaaccucGGUGCCGAGGCGGCUa -3' miRNA: 3'- -CGUa-GCUaCGG------------CUAUGGUUUUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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