miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 25327 0.68 0.898557
Target:  5'- --cUCGAUGCCGucgaccGUGCCAgcgaccaacgugaAGAUGGUCc -3'
miRNA:   3'- cguAGCUACGGC------UAUGGU-------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15588 0.67 0.919601
Target:  5'- gGUGUCGAUGaaGAgugcGCCA--ACGGCg -3'
miRNA:   3'- -CGUAGCUACggCUa---UGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 23666 0.67 0.919601
Target:  5'- cGCAUggCGAUGaaG-UACCA-GAUGGCCu -3'
miRNA:   3'- -CGUA--GCUACggCuAUGGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 8764 0.67 0.919601
Target:  5'- cGCAgCGGcucacUGCCGAccgGCCAc-ACGGUCg -3'
miRNA:   3'- -CGUaGCU-----ACGGCUa--UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 32617 0.67 0.918967
Target:  5'- cGCAgccuucuUCGcgGCCacUACCAucGCGGCg -3'
miRNA:   3'- -CGU-------AGCuaCGGcuAUGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 45129 0.67 0.913125
Target:  5'- cCGUgGAgGCgGGUACCGGcgucuCGGCCa -3'
miRNA:   3'- cGUAgCUaCGgCUAUGGUUuu---GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 25803 0.67 0.912461
Target:  5'- cGCcagCGAUGCCGGUGugguccugugcguCC-AGGCGaGCCu -3'
miRNA:   3'- -CGua-GCUACGGCUAU-------------GGuUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 30509 0.68 0.906351
Target:  5'- --cUUGGUGCUGAUACCAgcgaggaucccgGAGgGGUCc -3'
miRNA:   3'- cguAGCUACGGCUAUGGU------------UUUgCCGG- -5'
7249 5' -49.3 NC_001900.1 + 7950 0.68 0.906351
Target:  5'- aGCcUCgGGUGaUCGAgACCAAGguccACGGCCg -3'
miRNA:   3'- -CGuAG-CUAC-GGCUaUGGUUU----UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 26277 0.67 0.922108
Target:  5'- cGCAUCGAcagcaccgguagcggUGUCGAacgcGCCuu--CGGCCc -3'
miRNA:   3'- -CGUAGCU---------------ACGGCUa---UGGuuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15275 0.67 0.925777
Target:  5'- -gGUCGAgGCCGugGCCGcacgguuCGGCCg -3'
miRNA:   3'- cgUAGCUaCGGCuaUGGUuuu----GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 6728 0.67 0.937226
Target:  5'- aGCAUCGAggaGUCGAuUGCCA--ACGaCCu -3'
miRNA:   3'- -CGUAGCUa--CGGCU-AUGGUuuUGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 9019 0.66 0.952164
Target:  5'- aGC-UCGGggagGCCGugACCGAcaucgucggcGACGGCUa -3'
miRNA:   3'- -CGuAGCUa---CGGCuaUGGUU----------UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 10730 0.66 0.947479
Target:  5'- uUcgCGAaGUCGGUgGCCAAGACGcuGCCg -3'
miRNA:   3'- cGuaGCUaCGGCUA-UGGUUUUGC--CGG- -5'
7249 5' -49.3 NC_001900.1 + 42441 0.66 0.947479
Target:  5'- -gAUCGGgcugGCCcGUGCCGuGAACGGUg -3'
miRNA:   3'- cgUAGCUa---CGGcUAUGGU-UUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 36602 0.66 0.947479
Target:  5'- uGCAUCGccgcGCCGucgaacGCCAucgcgaAGGCGGUCg -3'
miRNA:   3'- -CGUAGCua--CGGCua----UGGU------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 26072 0.66 0.944528
Target:  5'- -gGUUGAUGCCGAgggccugcagcagcaUGuCCAcGAUGGUCu -3'
miRNA:   3'- cgUAGCUACGGCU---------------AU-GGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4394 0.66 0.942501
Target:  5'- cGCGUUccacGCUGucGCCGAGGCGGUCg -3'
miRNA:   3'- -CGUAGcua-CGGCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 42819 0.67 0.939372
Target:  5'- cGCGUCGAUcccgccccagaucagGgCGAUGCCcAGGauGCCg -3'
miRNA:   3'- -CGUAGCUA---------------CgGCUAUGGuUUUgcCGG- -5'
7249 5' -49.3 NC_001900.1 + 45619 0.67 0.937226
Target:  5'- gGUGUCGGUGCCGuugagguUCAGGguguACGuGCCa -3'
miRNA:   3'- -CGUAGCUACGGCuau----GGUUU----UGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.