miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 800 1.14 0.001803
Target:  5'- gGCAUCGAUGCCGAUACCAAAACGGCCc -3'
miRNA:   3'- -CGUAGCUACGGCUAUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 41079 0.79 0.337902
Target:  5'- cCAUCGAUGCUGGUgaggagguugcuGCCucgauGCGGCCa -3'
miRNA:   3'- cGUAGCUACGGCUA------------UGGuuu--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 21899 0.79 0.346502
Target:  5'- uGCGUCGAUGCgaGGaGCCAcAACGGCg -3'
miRNA:   3'- -CGUAGCUACGg-CUaUGGUuUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 29360 0.78 0.373232
Target:  5'- -gGUCGGUGCCGAUcagcACCGGAcccaucuccuCGGCCa -3'
miRNA:   3'- cgUAGCUACGGCUA----UGGUUUu---------GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 34969 0.76 0.481347
Target:  5'- -aGUgGGUGUCGAUcaggucgACCAAGGCGGCUg -3'
miRNA:   3'- cgUAgCUACGGCUA-------UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4573 0.75 0.525814
Target:  5'- aCAUCGAgcGCCGGUACaccguCGGCCu -3'
miRNA:   3'- cGUAGCUa-CGGCUAUGguuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 33778 0.75 0.548067
Target:  5'- gGCGUCucgGCCGA-ACCGu-GCGGCCa -3'
miRNA:   3'- -CGUAGcuaCGGCUaUGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15931 0.74 0.604806
Target:  5'- cGCccUGAUGgaCCGGgugACCAAGAUGGCCg -3'
miRNA:   3'- -CGuaGCUAC--GGCUa--UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 12888 0.74 0.604806
Target:  5'- gGguUCGGcUGCCGAggcgaUGCUGAAGCGaGCCg -3'
miRNA:   3'- -CguAGCU-ACGGCU-----AUGGUUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 23754 0.74 0.616269
Target:  5'- gGCAUCGAgaagGUCGAguucUACaAGAACGGCUc -3'
miRNA:   3'- -CGUAGCUa---CGGCU----AUGgUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 30620 0.73 0.627748
Target:  5'- --cUCGAaGCCGuUGCCGAAGCccucGGCCg -3'
miRNA:   3'- cguAGCUaCGGCuAUGGUUUUG----CCGG- -5'
7249 5' -49.3 NC_001900.1 + 31318 0.73 0.63923
Target:  5'- -uGUCGGUGCCGcccguGUACC-GGACGGUg -3'
miRNA:   3'- cgUAGCUACGGC-----UAUGGuUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 35639 0.73 0.63923
Target:  5'- gGCcUCGAUGUCGA--UCAGAuCGGCCc -3'
miRNA:   3'- -CGuAGCUACGGCUauGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 6415 0.73 0.662163
Target:  5'- gGCGUCGA-GCaGGUGCUc--GCGGCCa -3'
miRNA:   3'- -CGUAGCUaCGgCUAUGGuuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 31391 0.73 0.67359
Target:  5'- aGCAUCG-UGCCGAgggugucgGCCAGcgUGGUg -3'
miRNA:   3'- -CGUAGCuACGGCUa-------UGGUUuuGCCGg -5'
7249 5' -49.3 NC_001900.1 + 14872 0.73 0.67359
Target:  5'- cGCAUCGGUGuuGGgcACCucgGAGUGGCCu -3'
miRNA:   3'- -CGUAGCUACggCUa-UGGu--UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 24025 0.72 0.684974
Target:  5'- cGCGgcCGAaGCCcgcgccaaccucGGUGCCGAGGCGGCUa -3'
miRNA:   3'- -CGUa-GCUaCGG------------CUAUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5628 0.72 0.694042
Target:  5'- gGCAUCGGUGCCGccugguacuggACCGucGAGCGcCCa -3'
miRNA:   3'- -CGUAGCUACGGCua---------UGGU--UUUGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 12285 0.72 0.696303
Target:  5'- uCGUCGGagGCCGAUucUCGGucGACGGCCa -3'
miRNA:   3'- cGUAGCUa-CGGCUAu-GGUU--UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38555 0.72 0.728729
Target:  5'- gGCGUCGAccaucgUGCCcagcagGCCGAGgcccaucGCGGCCu -3'
miRNA:   3'- -CGUAGCU------ACGGcua---UGGUUU-------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.