miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 48445 0.67 0.925777
Target:  5'- cGCGUCGugcuUGCugCGAUGacaCAAGuaaacaccACGGCCg -3'
miRNA:   3'- -CGUAGCu---ACG--GCUAUg--GUUU--------UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 47966 0.71 0.77299
Target:  5'- aGUcgUGAUGCCgcGAUACCAAAGCucaGGUa -3'
miRNA:   3'- -CGuaGCUACGG--CUAUGGUUUUG---CCGg -5'
7249 5' -49.3 NC_001900.1 + 47859 0.7 0.783416
Target:  5'- uGCcugCGuUGCCGGUGCCuAAAccgcccCGGCCg -3'
miRNA:   3'- -CGua-GCuACGGCUAUGGuUUU------GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 47342 0.67 0.931652
Target:  5'- gGCAgacCGAUGCuguucgCGAUGCCu--ACGGUg -3'
miRNA:   3'- -CGUa--GCUACG------GCUAUGGuuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 46145 0.7 0.79367
Target:  5'- -gGUCGAUgaccagGCCGuUGCgCGAAGCGGCa -3'
miRNA:   3'- cgUAGCUA------CGGCuAUG-GUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 45815 0.71 0.762406
Target:  5'- aGCAUCuccagGUCGAacggguUGCCGAGGuCGGCCa -3'
miRNA:   3'- -CGUAGcua--CGGCU------AUGGUUUU-GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 45619 0.67 0.937226
Target:  5'- gGUGUCGGUGCCGuugagguUCAGGguguACGuGCCa -3'
miRNA:   3'- -CGUAGCUACGGCuau----GGUUU----UGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 45544 0.68 0.891919
Target:  5'- cGCGUCGAUGgCGu--CCuGGAugucacCGGCCa -3'
miRNA:   3'- -CGUAGCUACgGCuauGGuUUU------GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 45129 0.67 0.913125
Target:  5'- cCGUgGAgGCgGGUACCGGcgucuCGGCCa -3'
miRNA:   3'- cGUAgCUaCGgCUAUGGUUuu---GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 43059 0.67 0.923956
Target:  5'- aCAUCGGgugagGCCGAUcaugguugcccaggAUCAGccgcuuGCGGCCu -3'
miRNA:   3'- cGUAGCUa----CGGCUA--------------UGGUUu-----UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 42819 0.67 0.939372
Target:  5'- cGCGUCGAUcccgccccagaucagGgCGAUGCCcAGGauGCCg -3'
miRNA:   3'- -CGUAGCUA---------------CgGCUAUGGuUUUgcCGG- -5'
7249 5' -49.3 NC_001900.1 + 42734 0.67 0.937226
Target:  5'- --cUCGAUGUCGuugACCAucucGCGGaCCu -3'
miRNA:   3'- cguAGCUACGGCua-UGGUuu--UGCC-GG- -5'
7249 5' -49.3 NC_001900.1 + 42441 0.66 0.947479
Target:  5'- -gAUCGGgcugGCCcGUGCCGuGAACGGUg -3'
miRNA:   3'- cgUAGCUa---CGGcUAUGGU-UUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 42401 0.68 0.88427
Target:  5'- aCGUCGcGUGCCG-UAUCGgcAGGCaGGCCa -3'
miRNA:   3'- cGUAGC-UACGGCuAUGGU--UUUG-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 41872 0.68 0.87634
Target:  5'- uGCAU-GGUGucuCCGAUGaacuCCAAGGCGGCg -3'
miRNA:   3'- -CGUAgCUAC---GGCUAU----GGUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 41084 0.66 0.942501
Target:  5'- ---gCGGgccagGCCGGUgACCuc-GCGGCCg -3'
miRNA:   3'- cguaGCUa----CGGCUA-UGGuuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 41079 0.79 0.337902
Target:  5'- cCAUCGAUGCUGGUgaggagguugcuGCCucgauGCGGCCa -3'
miRNA:   3'- cGUAGCUACGGCUA------------UGGuuu--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 40290 0.68 0.891919
Target:  5'- --cUCGAccgugugGCCGGUcggcagugaGCCGcuGCGGCCg -3'
miRNA:   3'- cguAGCUa------CGGCUA---------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 39796 0.67 0.918967
Target:  5'- gGCGUUGGUgaucuugGCCG-UGCuCAGGcCGGCCu -3'
miRNA:   3'- -CGUAGCUA-------CGGCuAUG-GUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 39610 0.68 0.891919
Target:  5'- gGCcUCGAUGUCGAgguuguucgccUGCCAccACuGCCa -3'
miRNA:   3'- -CGuAGCUACGGCU-----------AUGGUuuUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.