miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 30509 0.68 0.906351
Target:  5'- --cUUGGUGCUGAUACCAgcgaggaucccgGAGgGGUCc -3'
miRNA:   3'- cguAGCUACGGCUAUGGU------------UUUgCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18030 0.68 0.902144
Target:  5'- uCAUCG-UGCCGGUGguCCAGaucgucaucaaccugGcuGCGGCCg -3'
miRNA:   3'- cGUAGCuACGGCUAU--GGUU---------------U--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 24610 0.68 0.89928
Target:  5'- gGCAUgGGcuccgccacUGCgUGggGCCAAGGCGGCUu -3'
miRNA:   3'- -CGUAgCU---------ACG-GCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 25327 0.68 0.898557
Target:  5'- --cUCGAUGCCGucgaccGUGCCAgcgaccaacgugaAGAUGGUCc -3'
miRNA:   3'- cguAGCUACGGC------UAUGGU-------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 39610 0.68 0.891919
Target:  5'- gGCcUCGAUGUCGAgguuguucgccUGCCAccACuGCCa -3'
miRNA:   3'- -CGuAGCUACGGCU-----------AUGGUuuUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 40290 0.68 0.891919
Target:  5'- --cUCGAccgugugGCCGGUcggcagugaGCCGcuGCGGCCg -3'
miRNA:   3'- cguAGCUa------CGGCUA---------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 45544 0.68 0.891919
Target:  5'- cGCGUCGAUGgCGu--CCuGGAugucacCGGCCa -3'
miRNA:   3'- -CGUAGCUACgGCuauGGuUUU------GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5291 0.68 0.891919
Target:  5'- aGCAcUGcUGCCG--GCCGugcguGACGGCCu -3'
miRNA:   3'- -CGUaGCuACGGCuaUGGUu----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 42401 0.68 0.88427
Target:  5'- aCGUCGcGUGCCG-UAUCGgcAGGCaGGCCa -3'
miRNA:   3'- cGUAGC-UACGGCuAUGGU--UUUG-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 5944 0.68 0.88349
Target:  5'- cGCAgcUCGAUGCUcugggcuGGcUGCUGAAcCGGCCa -3'
miRNA:   3'- -CGU--AGCUACGG-------CU-AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20043 0.68 0.87634
Target:  5'- gGCGUCuacaccGCCGAUGuccCCGAAGguCGGCCu -3'
miRNA:   3'- -CGUAGcua---CGGCUAU---GGUUUU--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 41872 0.68 0.87634
Target:  5'- uGCAU-GGUGucuCCGAUGaacuCCAAGGCGGCg -3'
miRNA:   3'- -CGUAgCUAC---GGCUAU----GGUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 3928 0.68 0.875532
Target:  5'- aGCuggcCGAgacGCCGGUACCcgccuccacggcgAAcGCGGCCg -3'
miRNA:   3'- -CGua--GCUa--CGGCUAUGG-------------UUuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 2678 0.69 0.868136
Target:  5'- cGCAacugCGGUGCCugcuacaacGCCA--GCGGCCa -3'
miRNA:   3'- -CGUa---GCUACGGcua------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38021 0.69 0.859664
Target:  5'- cGgGUUGAUaGCCGAUGaucggcUCGAAAUGGUCg -3'
miRNA:   3'- -CgUAGCUA-CGGCUAU------GGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20823 0.69 0.859664
Target:  5'- cCGUCGAcUGCaCGAcgcUACCGAcgaGGCCg -3'
miRNA:   3'- cGUAGCU-ACG-GCU---AUGGUUuugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 32067 0.69 0.850934
Target:  5'- cGCcUUGAUGCCGuccAUGCCGAGuGCGaCCa -3'
miRNA:   3'- -CGuAGCUACGGC---UAUGGUUU-UGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 15881 0.69 0.850934
Target:  5'- gGCGUUGAUcCCGAcgagguUGCCAAGcugGGCCa -3'
miRNA:   3'- -CGUAGCUAcGGCU------AUGGUUUug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 10760 0.69 0.850934
Target:  5'- aGCGUCGGuaUGCgGAagcUGCCGAccugGGCCg -3'
miRNA:   3'- -CGUAGCU--ACGgCU---AUGGUUuug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 5675 0.69 0.850934
Target:  5'- cGCAcucagCGAccGCCGcgACCucGAAACGGUCa -3'
miRNA:   3'- -CGUa----GCUa-CGGCuaUGG--UUUUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.