miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 45619 0.67 0.937226
Target:  5'- gGUGUCGGUGCCGuugagguUCAGGguguACGuGCCa -3'
miRNA:   3'- -CGUAGCUACGGCuau----GGUUU----UGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 16724 0.67 0.937226
Target:  5'- cCGUCGAUGUCaacgucgacaagGAcACCAAGgGCGGCUu -3'
miRNA:   3'- cGUAGCUACGG------------CUaUGGUUU-UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 42734 0.67 0.937226
Target:  5'- --cUCGAUGUCGuugACCAucucGCGGaCCu -3'
miRNA:   3'- cguAGCUACGGCua-UGGUuu--UGCC-GG- -5'
7249 5' -49.3 NC_001900.1 + 12652 0.67 0.931652
Target:  5'- uCAcCGA-GCCGAU-CCuGAACGGCg -3'
miRNA:   3'- cGUaGCUaCGGCUAuGGuUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 47342 0.67 0.931652
Target:  5'- gGCAgacCGAUGCuguucgCGAUGCCu--ACGGUg -3'
miRNA:   3'- -CGUa--GCUACG------GCUAUGGuuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 51 0.67 0.931652
Target:  5'- aGCA-CGG-GCCGAcGCUAGAGC-GCCu -3'
miRNA:   3'- -CGUaGCUaCGGCUaUGGUUUUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 15275 0.67 0.925777
Target:  5'- -gGUCGAgGCCGugGCCGcacgguuCGGCCg -3'
miRNA:   3'- cgUAGCUaCGGCuaUGGUuuu----GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 954 0.67 0.925777
Target:  5'- aGCAaccgCGAcUGCUGcugGCCu--ACGGCCg -3'
miRNA:   3'- -CGUa---GCU-ACGGCua-UGGuuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 48445 0.67 0.925777
Target:  5'- cGCGUCGugcuUGCugCGAUGacaCAAGuaaacaccACGGCCg -3'
miRNA:   3'- -CGUAGCu---ACG--GCUAUg--GUUU--------UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 43059 0.67 0.923956
Target:  5'- aCAUCGGgugagGCCGAUcaugguugcccaggAUCAGccgcuuGCGGCCu -3'
miRNA:   3'- cGUAGCUa----CGGCUA--------------UGGUUu-----UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 26277 0.67 0.922108
Target:  5'- cGCAUCGAcagcaccgguagcggUGUCGAacgcGCCuu--CGGCCc -3'
miRNA:   3'- -CGUAGCU---------------ACGGCUa---UGGuuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 8764 0.67 0.919601
Target:  5'- cGCAgCGGcucacUGCCGAccgGCCAc-ACGGUCg -3'
miRNA:   3'- -CGUaGCU-----ACGGCUa--UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15588 0.67 0.919601
Target:  5'- gGUGUCGAUGaaGAgugcGCCA--ACGGCg -3'
miRNA:   3'- -CGUAGCUACggCUa---UGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 23666 0.67 0.919601
Target:  5'- cGCAUggCGAUGaaG-UACCA-GAUGGCCu -3'
miRNA:   3'- -CGUA--GCUACggCuAUGGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 32617 0.67 0.918967
Target:  5'- cGCAgccuucuUCGcgGCCacUACCAucGCGGCg -3'
miRNA:   3'- -CGU-------AGCuaCGGcuAUGGUuuUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 39796 0.67 0.918967
Target:  5'- gGCGUUGGUgaucuugGCCG-UGCuCAGGcCGGCCu -3'
miRNA:   3'- -CGUAGCUA-------CGGCuAUG-GUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 45129 0.67 0.913125
Target:  5'- cCGUgGAgGCgGGUACCGGcgucuCGGCCa -3'
miRNA:   3'- cGUAgCUaCGgCUAUGGUUuu---GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 1173 0.67 0.913125
Target:  5'- gGCggCGGUGgaGccGCCgGAAGCGGCCg -3'
miRNA:   3'- -CGuaGCUACggCuaUGG-UUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 25803 0.67 0.912461
Target:  5'- cGCcagCGAUGCCGGUGugguccugugcguCC-AGGCGaGCCu -3'
miRNA:   3'- -CGua-GCUACGGCUAU-------------GGuUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 7950 0.68 0.906351
Target:  5'- aGCcUCgGGUGaUCGAgACCAAGguccACGGCCg -3'
miRNA:   3'- -CGuAG-CUAC-GGCUaUGGUUU----UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.