miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7251 5' -57.7 NC_001900.1 + 11145 0.66 0.542745
Target:  5'- aGCGCCucauccacggugAGCGCAacaagaacUACGGC-CACC-CGCg -3'
miRNA:   3'- -UGUGG------------UCGCGU--------GUGCCGuGUGGuGUG- -5'
7251 5' -57.7 NC_001900.1 + 24965 0.66 0.542745
Target:  5'- cGCACCuGGUG-GCgGCGGCGCAgCCGCAa -3'
miRNA:   3'- -UGUGG-UCGCgUG-UGCCGUGU-GGUGUg -5'
7251 5' -57.7 NC_001900.1 + 21484 0.66 0.542745
Target:  5'- uCACCcucucGGCGUuCGCGGC-CAUCGCAg -3'
miRNA:   3'- uGUGG-----UCGCGuGUGCCGuGUGGUGUg -5'
7251 5' -57.7 NC_001900.1 + 13678 0.66 0.532031
Target:  5'- cCGCCGGgGuuucucCugGCGGuCACACCugACc -3'
miRNA:   3'- uGUGGUCgC------GugUGCC-GUGUGGugUG- -5'
7251 5' -57.7 NC_001900.1 + 9336 0.66 0.521396
Target:  5'- gAC-CCGGaGCugGCGGCugaucuCAUCGCGCu -3'
miRNA:   3'- -UGuGGUCgCGugUGCCGu-----GUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 5570 0.66 0.521396
Target:  5'- -gACgCGGaGCAgGCGGCGCACCGaGCu -3'
miRNA:   3'- ugUG-GUCgCGUgUGCCGUGUGGUgUG- -5'
7251 5' -57.7 NC_001900.1 + 8638 0.67 0.463548
Target:  5'- gGCACCGGCGCcccgcugguguuccuGCACGGgCucucggugaGCGCCAagGCg -3'
miRNA:   3'- -UGUGGUCGCG---------------UGUGCC-G---------UGUGGUg-UG- -5'
7251 5' -57.7 NC_001900.1 + 31278 0.67 0.449609
Target:  5'- cCACCAGCGUgggcaGCAuCGGCugaauCGCCugcaGCGCa -3'
miRNA:   3'- uGUGGUCGCG-----UGU-GCCGu----GUGG----UGUG- -5'
7251 5' -57.7 NC_001900.1 + 13405 0.67 0.449609
Target:  5'- cCGCCAGagGCACAUGGCGCugguuCCGgGg -3'
miRNA:   3'- uGUGGUCg-CGUGUGCCGUGu----GGUgUg -5'
7251 5' -57.7 NC_001900.1 + 6358 0.67 0.449609
Target:  5'- -aACCAGCaGCGCAaggaUGGCACGCUgacCACc -3'
miRNA:   3'- ugUGGUCG-CGUGU----GCCGUGUGGu--GUG- -5'
7251 5' -57.7 NC_001900.1 + 25757 0.67 0.433967
Target:  5'- cGCGCCccGGCGCACGCGGagcuucaucgucuCGCCGuCAUc -3'
miRNA:   3'- -UGUGG--UCGCGUGUGCCgu-----------GUGGU-GUG- -5'
7251 5' -57.7 NC_001900.1 + 30997 0.68 0.420543
Target:  5'- cGCGCCAGCcuGCAcCACGGcCGCAgCCAgGu -3'
miRNA:   3'- -UGUGGUCG--CGU-GUGCC-GUGU-GGUgUg -5'
7251 5' -57.7 NC_001900.1 + 12799 0.68 0.411109
Target:  5'- cCGCUGGCGaugaaggaACugGGCuccaagaacgaGCGCCACGCa -3'
miRNA:   3'- uGUGGUCGCg-------UGugCCG-----------UGUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 34702 0.68 0.411109
Target:  5'- -gACCGGCGaACACcGCcugcCACCACACa -3'
miRNA:   3'- ugUGGUCGCgUGUGcCGu---GUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 18664 0.68 0.401808
Target:  5'- -gGCCGGC-CGUGCGGCGCugCAgGCg -3'
miRNA:   3'- ugUGGUCGcGUGUGCCGUGugGUgUG- -5'
7251 5' -57.7 NC_001900.1 + 48560 0.68 0.374721
Target:  5'- gGCACgUAGgGCACGugUGGCAgGCCAgACg -3'
miRNA:   3'- -UGUG-GUCgCGUGU--GCCGUgUGGUgUG- -5'
7251 5' -57.7 NC_001900.1 + 45667 0.69 0.354809
Target:  5'- ---aCGGCGCACAcgcucacggccggcCGGCcuCACCACACc -3'
miRNA:   3'- ugugGUCGCGUGU--------------GCCGu-GUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 33305 0.69 0.348898
Target:  5'- -gGCCGGCGCAgGCcGCACcuCCACGg -3'
miRNA:   3'- ugUGGUCGCGUgUGcCGUGu-GGUGUg -5'
7251 5' -57.7 NC_001900.1 + 6299 0.69 0.348059
Target:  5'- uCGCUGGCGCucuCAaccugguCGGCGCAgCCGCACc -3'
miRNA:   3'- uGUGGUCGCGu--GU-------GCCGUGU-GGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 30498 0.69 0.3324
Target:  5'- gGCACCAGCgGUGC-CaGCGCACUGCAg -3'
miRNA:   3'- -UGUGGUCG-CGUGuGcCGUGUGGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.